Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1283 ATGGCGGATGGCGAGGACATTCAGCCACTTGTGTGTGATAATGGAACTGGAATGGTTAAGGCTGGGTTCGCCGGAGATGATGCTCCCAGGGCCGTGTTCCCGAGCATTGTGGGCCGTCCTCGCCACACTGGCGTGATGGTCGGTATGGGCCAGAAAGATGCTTATGTTGGTGATGAGGCCCAATCCAAGCGAGGTATTTTGACACTGAAATACCCGATTGAACATGGTATTGTCAATAACTGGGATGATATGGAAAAGATCTGGCATCACACTTTCTATAACGAGCTTCGAGTAGCTCCGGAAGAGCACCCTGTTCTTTTAACAGAGGCTCCTCTTAATCCCAAAGCTAACCGTGAAAAGATGACCCAAATCATGTTCGAGACATTTAATGCTCCTGCTATGTATGTAGCCATTCAAGCTGTTCTTTCCCTCTATGCAAGTGGCCGTACAACTGGTATTGTATTGGACTCTGGTGATGGTGTGAGTCATACAGTCCCTATATATGAAGGGTATGCCCTCCCACATGCTATCCTTCGTCTGGACCTAGCCGGGCGGGATCTTACAGATTCTTTCATGAAGATTCTCACTGAGAGGGGATATTCTTTCACAACTACAGCAGAGCGGGAAATCGTGAGGGATATGAAGGAAAAACTAGCATATATTGCTCTTGACTATGAACAAGAGCTCGAAACCTCTGAGTCCAGCTCATCAGTTGAGAAGAGCTTTGAGTTGCCAGATGGACAGGTCATCACTATCGGTGCTGAACGGTTCAGATGCCCCGAGGTTCTTTTCCAACCGTCCATGATTGGAATGGAAGCAGCAGGGATTCATGAGACGACATATAACTCGATTATGAAATGTGATGTGGATATTAGAAAGGATTTGTATGGAAATATTGTTCTGTCTGGTGGCTCCACCATGTTTCCAGGTATTGGTGATAGGATGAGCAAGGAAATCTCAGCTTTGGCTCCGAGCAGTATGAAAATTAAGGTGGTGGCTCCTCCTGAGAGAAAGTACAGTGTCTGGATTGGAGGGTCTATTTTGGCATCTTTGAGCACTTTCCAGCAGATGTGGATTTCTAAGGCAGAGTACGATGAATCTGGCCCATCCATTGTGCACAGGAAATGCTTCTAA 1134 46.65 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDSFMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSESSSSVEKSFELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIGDRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56236946 56239164 - Conep01aG0133500.1 Cone1ag1283 431974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1283 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cone1ag1283 377 Pfam Actin 5 377 IPR004000 -
Cone1ag1283 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Cone1ag1283 377 FunFam Actin, alpha skeletal muscle 331 377 - -
Cone1ag1283 377 FunFam Actin, muscle 182 273 - -
Cone1ag1283 377 PRINTS Actin signature 51 62 IPR004000 -
Cone1ag1283 377 PRINTS Actin signature 63 85 IPR004000 -
Cone1ag1283 377 PRINTS Actin signature 142 161 IPR004000 -
Cone1ag1283 377 PRINTS Actin signature 28 37 IPR004000 -
Cone1ag1283 377 PRINTS Actin signature 117 130 IPR004000 -
Cone1ag1283 377 PRINTS Actin signature 238 254 IPR004000 -
Cone1ag1283 377 SMART actin_3 7 377 IPR004000 -
Cone1ag1283 377 Gene3D - 10 371 - -
Cone1ag1283 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Cone1ag1283 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cone1ag1283 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Cone1ag1283 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Cone1ag1283 377 Gene3D - 140 340 - -
Cone1ag1283 377 FunFam Actin, alpha skeletal muscle 255 330 - -
Cone1ag1283 377 FunFam Actin, alpha skeletal muscle 3 167 - -
Cone1ag1283 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Cone1ag1283 377 PANTHER ACTIN 8 369 IPR004000 GO:0005737(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0079 Cone-Chr10:448303 Cone1ag1283 Cone-Chr1:56236946 6.14E-66 dispersed
Cone1ag1283 Cone-Chr1:56236946 Cone3ag0092 Cone-Chr3:533119 3.26E-271 dispersed
Cone12ag0933 Cone-Chr12:8147612 Cone1ag1283 Cone-Chr1:56236946 2.41E-34 transposed
Cone1ag0645 Cone-Chr1:6178565 Cone1ag1283 Cone-Chr1:56236946 1.55E-269 wgd
Cone1ag1283 Cone-Chr1:56236946 Cone10ag0307 Cone-Chr10:1459597 3.40E-273 wgd
Cone1ag1283 Cone-Chr1:56236946 Cone3ag0336 Cone-Chr3:1708645 3.40E-273 wgd
Cone1ag1283 Cone-Chr1:56236946 Cone5ag0269 Cone-Chr5:1138546 3.40E-273 wgd
Cone1ag1283 Cone-Chr1:56236946 Cone5ag1152 Cone-Chr5:5192143 8.83E-170 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1283 K10355 - cit:102619732 729.169