Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1284 ATGGTTTTCTCATCTATTCCCGTCTATCTGGATCCACCCAACTGGACACAACAGCAAGCAGCAAATGATCAGCAACCACCTGGAGTTGTGCTCGGAAACGGTGTTCATCATGATGATCAGGGTATCAACCCTCAGCTCCTACCTCCAGTATCAGCTGGAGGCGGGCCGGGCGCGAACTCAAGTATTAGGCCTGGTTCAACCACCGATCGAGCCCGGCTGGCAAAGATTCCTCCACCAGAAGCGGTCCTAAAATGTCCGAGATGCGAATCAACAAACACCAAGTTCTGTTACTTCAATAACTACAGTCTGACTCAGCCACGTCACTTCTGCAAGACTTGCCGCCGTTACTGGACCCGAGGAGGTGCGCTTAGGAACGTTCCGGTAGGTGGAGGGTGTAGAAGAAACAAACGATCAAGCAAGAGTCGATCAAGTAGATCAAAATCTCCAGCTATTGACCTTCAGGTACTACCCCAAGCTGCTCATCATGGCGGTTCAAGCTCTACGAGTACGGTTTCTTCTAATGGCTGCGCGGCCGATCCTCATGTAATTGGTTATTTTGCCCCCACAGCATCACCTCAATTACCTTTTCTACCCTCTTTACATCACCTAAGTAATAGCGATTACGGTTTTAATTTTTCGGGATTAAGTAGTAATCAGCCCCAAGTGTTAGCAACGATCGCGCAAGGGACTGGTGCGGGGAATATTCCAGAGCAGTGGAGATGGAATCAAGTGCAGCAGTTTCCATTCTTGACTAATTTGGAACCGCCTGGCGTTTCTAGTTTATATACGTTCGATCAAGGTGTTAATCGTGTCTGTAACTTGTCTAAGCCGTTTGATAATAGTGGTGCTACAATTAAAATGGAAGAGAATCAGAGGAATCATGATGCATCAAGGAAATTCTTGAGTGGCCAAGGAAACGGTCATGATCATCATCATCAATTTAACTGGAGCGAGGGAAATCATACATGGAATGATCTTTCTGGTTTCAATTCTTCTAGTTCCAGCCATCTCTTGTGA 1017 46.71 MVFSSIPVYLDPPNWTQQQAANDQQPPGVVLGNGVHHDDQGINPQLLPPVSAGGGPGANSSIRPGSTTDRARLAKIPPPEAVLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSSKSRSSRSKSPAIDLQVLPQAAHHGGSSSTSTVSSNGCAADPHVIGYFAPTASPQLPFLPSLHHLSNSDYGFNFSGLSSNQPQVLATIAQGTGAGNIPEQWRWNQVQQFPFLTNLEPPGVSSLYTFDQGVNRVCNLSKPFDNSGATIKMEENQRNHDASRKFLSGQGNGHDHHHQFNWSEGNHTWNDLSGFNSSSSSHLL 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56242528 56243736 - Conep01aG0133600.1 Cone1ag1284 431975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1284 338 ProSitePatterns Zinc finger Dof-type signature. 85 121 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone1ag1284 338 MobiDBLite consensus disorder prediction 17 75 - -
Cone1ag1284 338 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 72 213 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag1284 338 MobiDBLite consensus disorder prediction 290 314 - -
Cone1ag1284 338 ProSiteProfiles Zinc finger Dof-type profile. 83 137 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone1ag1284 338 MobiDBLite consensus disorder prediction 127 152 - -
Cone1ag1284 338 Pfam Dof domain, zinc finger 82 137 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1284 Cone-Chr1:56242528 Cone5ag1208 Cone-Chr5:5520489 6.13E-33 dispersed
Cone1ag0649 Cone-Chr1:6195157 Cone1ag1284 Cone-Chr1:56242528 2.74E-61 wgd
Cone1ag1284 Cone-Chr1:56242528 Cone10ag0305 Cone-Chr10:1446767 5.14E-47 wgd
Cone1ag1284 Cone-Chr1:56242528 Cone13ag1337 Cone-Chr13:9841457 7.14E-69 wgd
Cone1ag1284 Cone-Chr1:56242528 Cone19ag1320 Cone-Chr19:8863235 8.75E-66 wgd
Cone1ag1284 Cone-Chr1:56242528 Cone3ag0333 Cone-Chr3:1692917 8.92E-54 wgd
Cone1ag1284 Cone-Chr1:56242528 Cone5ag0270 Cone-Chr5:1144528 4.83E-200 wgd
Cone1ag1284 Cone-Chr1:56242528 Cone5ag1158 Cone-Chr5:5209015 3.79E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45502 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1284 - - - 0.0