Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1284 ATGGTTTTCTCATCTATTCCCGTCTATCTGGATCCACCCAACTGGACACAACAGCAAGCAGCAAATGATCAGCAACCACCTGGAGTTGTGCTCGGAAACGGTGTTCATCATGATGATCAGGGTATCAACCCTCAGCTCCTACCTCCAGTATCAGCTGGAGGCGGGCCGGGCGCGAACTCAAGTATTAGGCCTGGTTCAACCACCGATCGAGCCCGGCTGGCAAAGATTCCTCCACCAGAAGCGGTCCTAAAATGTCCGAGATGCGAATCAACAAACACCAAGTTCTGTTACTTCAATAACTACAGTCTGACTCAGCCACGTCACTTCTGCAAGACTTGCCGCCGTTACTGGACCCGAGGAGGTGCGCTTAGGAACGTTCCGGTAGGTGGAGGGTGTAGAAGAAACAAACGATCAAGCAAGAGTCGATCAAGTAGATCAAAATCTCCAGCTATTGACCTTCAGGTACTACCCCAAGCTGCTCATCATGGCGGTTCAAGCTCTACGAGTACGGTTTCTTCTAATGGCTGCGCGGCCGATCCTCATGTAATTGGTTATTTTGCCCCCACAGCATCACCTCAATTACCTTTTCTACCCTCTTTACATCACCTAAGTAATAGCGATTACGGTTTTAATTTTTCGGGATTAAGTAGTAATCAGCCCCAAGTGTTAGCAACGATCGCGCAAGGGACTGGTGCGGGGAATATTCCAGAGCAGTGGAGATGGAATCAAGTGCAGCAGTTTCCATTCTTGACTAATTTGGAACCGCCTGGCGTTTCTAGTTTATATACGTTCGATCAAGGTGTTAATCGTGTCTGTAACTTGTCTAAGCCGTTTGATAATAGTGGTGCTACAATTAAAATGGAAGAGAATCAGAGGAATCATGATGCATCAAGGAAATTCTTGAGTGGCCAAGGAAACGGTCATGATCATCATCATCAATTTAACTGGAGCGAGGGAAATCATACATGGAATGATCTTTCTGGTTTCAATTCTTCTAGTTCCAGCCATCTCTTGTGA 1017 46.71 MVFSSIPVYLDPPNWTQQQAANDQQPPGVVLGNGVHHDDQGINPQLLPPVSAGGGPGANSSIRPGSTTDRARLAKIPPPEAVLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSSKSRSSRSKSPAIDLQVLPQAAHHGGSSSTSTVSSNGCAADPHVIGYFAPTASPQLPFLPSLHHLSNSDYGFNFSGLSSNQPQVLATIAQGTGAGNIPEQWRWNQVQQFPFLTNLEPPGVSSLYTFDQGVNRVCNLSKPFDNSGATIKMEENQRNHDASRKFLSGQGNGHDHHHQFNWSEGNHTWNDLSGFNSSSSSHLL 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56242528 56243736 - Conep01aG0133600.1 Cone1ag1284 431975

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1284 338 ProSitePatterns Zinc finger Dof-type signature. 85 121 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone1ag1284 338 MobiDBLite consensus disorder prediction 17 75 - -
Cone1ag1284 338 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 72 213 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag1284 338 MobiDBLite consensus disorder prediction 290 314 - -
Cone1ag1284 338 ProSiteProfiles Zinc finger Dof-type profile. 83 137 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone1ag1284 338 MobiDBLite consensus disorder prediction 127 152 - -
Cone1ag1284 338 Pfam Dof domain, zinc finger 82 137 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1284 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1284 Cone-Chr1:56242528 Cone5ag1208 Cone-Chr5:5520489 6.13E-33 dispersed
Cone1ag0649 Cone-Chr1:6195157 Cone1ag1284 Cone-Chr1:56242528 2.74E-61 wgd
Cone1ag1284 Cone-Chr1:56242528 Cone10ag0305 Cone-Chr10:1446767 5.14E-47 wgd
Cone1ag1284 Cone-Chr1:56242528 Cone13ag1337 Cone-Chr13:9841457 7.14E-69 wgd
Cone1ag1284 Cone-Chr1:56242528 Cone19ag1320 Cone-Chr19:8863235 8.75E-66 wgd
Cone1ag1284 Cone-Chr1:56242528 Cone3ag0333 Cone-Chr3:1692917 8.92E-54 wgd
Cone1ag1284 Cone-Chr1:56242528 Cone5ag0270 Cone-Chr5:1144528 4.83E-200 wgd
Cone1ag1284 Cone-Chr1:56242528 Cone5ag1158 Cone-Chr5:5209015 3.79E-67 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone6ag0960 . 1 151 C2C2-Dof Transcription Factor Family AT1G29160 54.7 1.3e-42 170.2
Cone9ag0968 . 1 150 C2C2-Dof Transcription Factor Family AT1G29160 56.5 1.7e-42 169.9
Cone6ag0960 . 1 151 C2C2-Dof Transcription Factor Family AT2G34140 53.9 6.3e-42 167.9
Cone9ag0968 . 1 150 C2C2-Dof Transcription Factor Family AT2G34140 55.7 2.4e-41 166.0
Cone5ag0270 . 1 131 C2C2-Dof Transcription Factor Family AT2G37590 59.7 1.0e-40 164.9
Cone3ag0333 . 1 133 C2C2-Dof Transcription Factor Family AT2G37590 60.8 1.5e-39 161.0
Cone10ag0305 . 1 142 C2C2-Dof Transcription Factor Family AT2G37590 60.3 8.1e-38 155.2
Cone1ag0649 . 1 127 C2C2-Dof Transcription Factor Family AT2G37590 56.7 9.0e-37 151.8
Cone5ag1158 . 1 127 C2C2-Dof Transcription Factor Family AT2G37590 57.4 9.0e-37 151.8
Cone5ag0270 . 1 131 C2C2-Dof Transcription Factor Family AT5G02460 58.2 9.5e-41 165.2
Cone1ag1284 . 1 135 C2C2-Dof Transcription Factor Family AT5G02460 56.3 3.1e-39 160.2
Cone5ag1158 . 1 127 C2C2-Dof Transcription Factor Family AT5G02460 58.5 2.0e-38 157.5
Cone1ag0649 . 1 127 C2C2-Dof Transcription Factor Family AT5G02460 55.1 3.7e-37 153.3
Cone6ag1371 . 22 230 C2C2-Dof Transcription Factor Family AT3G50410 50.2 2.7e-49 193.0
Cone5ag0270 . 54 248 C2C2-Dof Transcription Factor Family AT3G55370 50.7 1.4e-41 167.9
Cone19ag0032 . 27 307 C2C2-Dof Transcription Factor Family AT5G60850 50.7 3.6e-40 162.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007574 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45502 None None None None Cone TF