Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1308 ATGGAGCTGTTAGAAGCATATGTCGTGCATTTCATGAAGAAGCTGAAACGTCAAACATCTACTTGGCTACCACTTTGCACCCGTGTAGAAAATTCCGATTCAAAATTTTCAGTTGGAAGCTTTCCATCAACCCCAAATTCTCTTTCTCTAGGCCGTGTTCTAACCTTCTCCGAGATTAGTGAAGCCACGAGGAACTTTGATGAGAGCTTGGTCCTAGGTGTAGTAAAACGTGGAAATCCAAAATTCCAACAAGTACTTGTGGAATTCAGGACAGAAATAGAAATGCTCTCTAAGCTCCGTCATAGACACTTGGTTTCTCTAATAGGCTATTGTGAAGAACTCAATGAGATGATCCTAGTTTATGAGTTAATGGAAAAGAGTCCTCTTAGAAGGCACTTGTACGGTTCAAATCTTAATCCTCTTACTTGGAAACAGAGGCTAGAAATTTTGATTGGAGCAGCAAAAGGGTTGCGTTACCTTCACACAGGAGCTGCAGAGAGTATAGTAATTCACCGTGACGTTAAGACAACAAATACCCATGTAAGTACTACAGTGAAAGGAAGCTTTGGGTATCTTGATCCGGAGTATTTCCGTAGGCAGCAGTTGACTAAGAAATCCAATCTGTACTCTTTTGGGGTTGTGATGATTGAGGTTTTATGTGCTAGGCCGGCTATAAACCTACCTCTTGCAAGGGAGCAAGTGAATATAGCAGAATGGGCAATGAAGTGGCAGAAGAGGGGGCAGTTAGAGAAGGTAATGGATCTTCATTTGAAAGGGTGTGTTGATTTAGAGTCATTGAGGAAATATGGCGAAACTGCAGAGAAGTGTTTGGCTGAAAATAGGGTAGAGACTAGAGAGGCTAAGCATGGGAGATGTTTTGTGGAATTTAGAGTACGCACTTCAATTGCAGGAGGCTTTTGTACAACCTTTTTCAGGTTACAATATAGTACGGATCATATGCCGTGTATTTCTACGATGGAAACTGAATCTTGTGTTCACGATGGAAATGATGAATCTGATGCCATGTTGAGCGGAGTGTTTTCCGAGTTTATGAATCCTAATGGAAGATAG 1071 41.46 MELLEAYVVHFMKKLKRQTSTWLPLCTRVENSDSKFSVGSFPSTPNSLSLGRVLTFSEISEATRNFDESLVLGVVKRGNPKFQQVLVEFRTEIEMLSKLRHRHLVSLIGYCEELNEMILVYELMEKSPLRRHLYGSNLNPLTWKQRLEILIGAAKGLRYLHTGAAESIVIHRDVKTTNTHVSTTVKGSFGYLDPEYFRRQQLTKKSNLYSFGVVMIEVLCARPAINLPLAREQVNIAEWAMKWQKRGQLEKVMDLHLKGCVDLESLRKYGETAEKCLAENRVETREAKHGRCFVEFRVRTSIAGGFCTTFFRLQYSTDHMPCISTMETESCVHDGNDESDAMLSGVFSEFMNPNGR 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56331481 56332930 - Conep01aG0136200.1 Cone1ag1308 431999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1308 356 Gene3D Transferase(Phosphotransferase) domain 1 179 289 - -
Cone1ag1308 356 Pfam Protein tyrosine and serine/threonine kinase 56 182 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone1ag1308 356 PANTHER OS07G0166700 PROTEIN 54 178 IPR045272 GO:0004672(PANTHER)|GO:0004714(InterPro)|GO:0005886(PANTHER)|GO:0006468(InterPro)|GO:0009506(PANTHER)|GO:0046777(PANTHER)
Cone1ag1308 356 SUPERFAMILY Protein kinase-like (PK-like) 44 268 IPR011009 -
Cone1ag1308 356 Gene3D Transferase(Phosphotransferase) domain 1 125 178 - -
Cone1ag1308 356 ProSiteProfiles Protein kinase domain profile. 39 356 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag1308 356 Gene3D Phosphorylase Kinase; domain 1 66 124 - -
Cone1ag1308 356 SMART serkin_6 48 311 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1308 Cone-Chr1:56331481 Cone6ag0119 Cone-Chr6:572346 7.43E-109 dispersed
Cone1ag1308 Cone-Chr1:56331481 Cone5ag0290 Cone-Chr5:1226688 1.72E-174 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82504 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1308 - - - 0.0