Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone1ag1316 | ATGGTGGGTATTGAAGATAGTAACTCTGGAAATTCGCGGGCTCCACCTCCTCTCTCTGGAAATAGGAAATTGTTCTGGCGCTCAGCATCCTGGTCTTCATCTCGAACATCTCACAATCCAGAGTCTGAGGAAAATGATGGTTTAGATCTGAATAGTAACATTCCTAATAGTAATGGGCAAAGTAGAAGGTTTCCGGCTCCACTAACCCCTAGATCCCAACAAAATTGCAAGGCAAGGTCATGCTTACCTCCATTGCAGCCATTGTCGATAGCTCGCCGGAGCTTGGATGAATGGCCAAAGGCAGGGTCGGACGATATAGGGGAGTGGCCCCAACCTCCCACCCCAAGTGGAAGACGAAATGGGGAGAATTTGAAGCTTGATCTGTCTACAATTCAGAGAGACACGGATAAGAGTGGTGGACTAGTGAAGAGAGATAAGATTGCTTTTTTCGACAAGGAGTGTTCGAAAGTGGCTGAACATGTCTACCTTGGTGGGGATGCAGTTGCCCGAGATAGAGATATACTTAAACAGAATGGAATTACCCATATATTGAATTGTGTGGGGTTTGTTTGCCCAGAATACTTCAAAACTGATTTTGTGTATAGAACTTTATGGTTGCAAGATAGCCCATCAGAAGACATTACTAGTATTTTATATGATGTTTTTGACTACTTTGAAGATGTCAGGGAAGAGGGAGGAAGGGTTTTTGTTCATTGTTGCCAAGGAGTATCTAGGTCCACATCTTTGGTTATTGCTTATCTAATGTGGAGAGAAGGACAGAGTTTTGATGATGCATTTCAGTATGTGAAAGCGGCTAGAGGTATAGCTGATCCGAATATGGGTTTTGCTTGCCAATTATTACAGTGTCAAAAGAGAGTCCATGCATTTCCTCTAAGCCCAAGTTCACTTTTGAGAATGTATAGGATCGCCCCACACTCATCATATGATCCGTTGCATCTTGTCCCAAAGTTGTTAAACGATCCTTCTCCTTCTGCTCTAGATTCCAGAGGTGCATTTATCATTCATATACCTTCTATGATGTATGTTTGGATCGGGAAGAATTGTGATGCAATTATGGAAAGGGATGCAAGGGGAGCAGTTTGTCAGATTGTAAGATATGAGAGAGTGCAGGGGCCGATAGTAGTGATTAAGGAAGGATTAGAACCAGTTTATTTTTGGGATTCTTTTTCAAACTTGTTACCTTTGATGGACAAATCATGCAATGGAAACAACCCTGGGGAATCAAAGGGCAAGATTTGTGCTGGTGAGAGAAAAGTAGACTTATATGATGTTGATTTTGAGATTTTTCAGAAGGCTATTACTGGTGGTTTTGCTCCTCCATTTGCTTCATCAGAGAATGAACATGAAACCCGTCTTCCTGCTAGAGAAAGCAATTGGAGTGTGCTAAGGAGAAAGTTTGCTTCTGGCATTATGAAGGAGTTTGTATCTGCTTCTAGAATCTTACTTTCTAGAGCCTATTCAGAGTCTATGATGGTGGTACATCCAAGTGCTAAATCTACTTCTCCTTCTTCGTCATCATTATCTTCTTCCTCGTCTTCTTCACCTAGTTTTCATTCTCCAGATTCCCTCTCTTCTGACTCTAGTACAAACTCAAAGTTCTTTTCAGAATCTCCTTTGGATTCTCCATCCGCTGCTTCACGTTCATTTCCAGTAACTTTGTCAAACTTTTCTAACCCATCTCACCTTTCATCTGTAACTCCCTTTGAGCCCATACAAGATGGTCCAAAACTTTCTGTCGAGGTAGCTTCAGGACCTAACTCTCAGTCATTCCCATTACCATCTAAAAAGCTTTCACCTTCCCTTGCAGAACGCAGAGGTAGCTTATCGAAGACTCTGAAATTGCCATTGATGACTGATAAAAGGCGGGCAACAAGTAATCCTTCAAGTTTCCTTTCCAAGAGAGAAGATGATGAAACGAGGGACACTGCTAGTTACTCTTTAAATGAAACGTATAGTAAGGAAAATTACTTAGAATCCATTTGTAGTGTTGAAAGGGAAGGGGAAGATTCAACCCAGAAGTGTAAGGAAATTGTTCAAAATGGAGTCCAAGGCAGGGAAAGGAGCCCAAATTTATTCATGGGAAGAGGCGAAGTGTCCAATATCTTAAATAGAGTGGAAGGAACTGGCTCAACACAATGTGTTCAACCTTTGGTTTATAGTTGGCCCTGCTTAGAAAAGACTGCAGCATTCAATGCAACTTACCTGGATTCTAAAGCTGCTTGGGCAATTTTCTCACCAAATAGAGGCTTATCCAAGAAAGATGAAAGGTTGTTGTATCTTTGGGTAGGTAGTTCTTTTGACCCTGACAAGTGTCGGATTCATTTAGATAGTGATGAAGAGATAGAAAATTTAGAAAAGATTGACTGGAGTCTAGTGGGCCGCCATGTTCTTACTAAGCTGGGAATGCCAGAAGAGACTGAGATCAAGGTTATTAAGGAAGACGAAGAAACAGAGGAATTTCTTGCATTATTGAGTCTGATGTAA | 2505 | 41.48 | MVGIEDSNSGNSRAPPPLSGNRKLFWRSASWSSSRTSHNPESEENDGLDLNSNIPNSNGQSRRFPAPLTPRSQQNCKARSCLPPLQPLSIARRSLDEWPKAGSDDIGEWPQPPTPSGRRNGENLKLDLSTIQRDTDKSGGLVKRDKIAFFDKECSKVAEHVYLGGDAVARDRDILKQNGITHILNCVGFVCPEYFKTDFVYRTLWLQDSPSEDITSILYDVFDYFEDVREEGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQYVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRMYRIAPHSSYDPLHLVPKLLNDPSPSALDSRGAFIIHIPSMMYVWIGKNCDAIMERDARGAVCQIVRYERVQGPIVVIKEGLEPVYFWDSFSNLLPLMDKSCNGNNPGESKGKICAGERKVDLYDVDFEIFQKAITGGFAPPFASSENEHETRLPARESNWSVLRRKFASGIMKEFVSASRILLSRAYSESMMVVHPSAKSTSPSSSSLSSSSSSSPSFHSPDSLSSDSSTNSKFFSESPLDSPSAASRSFPVTLSNFSNPSHLSSVTPFEPIQDGPKLSVEVASGPNSQSFPLPSKKLSPSLAERRGSLSKTLKLPLMTDKRRATSNPSSFLSKREDDETRDTASYSLNETYSKENYLESICSVEREGEDSTQKCKEIVQNGVQGRERSPNLFMGRGEVSNILNRVEGTGSTQCVQPLVYSWPCLEKTAAFNATYLDSKAAWAIFSPNRGLSKKDERLLYLWVGSSFDPDKCRIHLDSDEEIENLEKIDWSLVGRHVLTKLGMPEETEIKVIKEDEETEEFLALLSLM | 834 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 56368187 | 56371895 | - | Conep01aG0137000.1 | Cone1ag1316 | 432007 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone1ag1316 | 834 | ProSiteProfiles | Dual specificity protein phosphatase domain profile. | 153 | 295 | IPR020422 | GO:0006470(InterPro) | |
| Cone1ag1316 | 834 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 148 | 294 | IPR029021 | - | |
| Cone1ag1316 | 834 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
| Cone1ag1316 | 834 | PANTHER | MKPA PROTEIN | 8 | 831 | - | - | |
| Cone1ag1316 | 834 | CDD | DSP | 154 | 288 | - | - | |
| Cone1ag1316 | 834 | MobiDBLite | consensus disorder prediction | 583 | 651 | - | - | |
| Cone1ag1316 | 834 | Pfam | Dual specificity phosphatase, catalytic domain | 161 | 291 | IPR000340 | GO:0016311(InterPro) | |
| Cone1ag1316 | 834 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 237 | 247 | IPR016130 | GO:0016311(InterPro) | |
| Cone1ag1316 | 834 | MobiDBLite | consensus disorder prediction | 46 | 80 | - | - | |
| Cone1ag1316 | 834 | SMART | dsp_5 | 153 | 292 | IPR020422 | GO:0006470(InterPro) | |
| Cone1ag1316 | 834 | MobiDBLite | consensus disorder prediction | 588 | 602 | - | - | |
| Cone1ag1316 | 834 | MobiDBLite | consensus disorder prediction | 1 | 81 | - | - | |
| Cone1ag1316 | 834 | MobiDBLite | consensus disorder prediction | 502 | 549 | - | - | |
| Cone1ag1316 | 834 | SUPERFAMILY | Actin depolymerizing proteins | 300 | 403 | - | - | |
| Cone1ag1316 | 834 | MobiDBLite | consensus disorder prediction | 99 | 122 | - | - | |
| Cone1ag1316 | 834 | Gene3D | Protein tyrosine phosphatase superfamily | 135 | 295 | IPR029021 | - | |
| Cone1ag1316 | 834 | Gene3D | Severin | 304 | 399 | IPR029006 | - | |
| Cone1ag1316 | 834 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 212 | 273 | IPR000387 | GO:0016311(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone1ag1316 | Cone-Chr1:56368187 | Cone8ag0701 | Cone-Chr8:7076874 | 8.86E-148 | dispersed | |
| Cone1ag1316 | Cone-Chr1:56368187 | Cone5ag0297 | Cone-Chr5:1254999 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone1ag1316 | - | - | - | 0.0 |