Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1316 ATGGTGGGTATTGAAGATAGTAACTCTGGAAATTCGCGGGCTCCACCTCCTCTCTCTGGAAATAGGAAATTGTTCTGGCGCTCAGCATCCTGGTCTTCATCTCGAACATCTCACAATCCAGAGTCTGAGGAAAATGATGGTTTAGATCTGAATAGTAACATTCCTAATAGTAATGGGCAAAGTAGAAGGTTTCCGGCTCCACTAACCCCTAGATCCCAACAAAATTGCAAGGCAAGGTCATGCTTACCTCCATTGCAGCCATTGTCGATAGCTCGCCGGAGCTTGGATGAATGGCCAAAGGCAGGGTCGGACGATATAGGGGAGTGGCCCCAACCTCCCACCCCAAGTGGAAGACGAAATGGGGAGAATTTGAAGCTTGATCTGTCTACAATTCAGAGAGACACGGATAAGAGTGGTGGACTAGTGAAGAGAGATAAGATTGCTTTTTTCGACAAGGAGTGTTCGAAAGTGGCTGAACATGTCTACCTTGGTGGGGATGCAGTTGCCCGAGATAGAGATATACTTAAACAGAATGGAATTACCCATATATTGAATTGTGTGGGGTTTGTTTGCCCAGAATACTTCAAAACTGATTTTGTGTATAGAACTTTATGGTTGCAAGATAGCCCATCAGAAGACATTACTAGTATTTTATATGATGTTTTTGACTACTTTGAAGATGTCAGGGAAGAGGGAGGAAGGGTTTTTGTTCATTGTTGCCAAGGAGTATCTAGGTCCACATCTTTGGTTATTGCTTATCTAATGTGGAGAGAAGGACAGAGTTTTGATGATGCATTTCAGTATGTGAAAGCGGCTAGAGGTATAGCTGATCCGAATATGGGTTTTGCTTGCCAATTATTACAGTGTCAAAAGAGAGTCCATGCATTTCCTCTAAGCCCAAGTTCACTTTTGAGAATGTATAGGATCGCCCCACACTCATCATATGATCCGTTGCATCTTGTCCCAAAGTTGTTAAACGATCCTTCTCCTTCTGCTCTAGATTCCAGAGGTGCATTTATCATTCATATACCTTCTATGATGTATGTTTGGATCGGGAAGAATTGTGATGCAATTATGGAAAGGGATGCAAGGGGAGCAGTTTGTCAGATTGTAAGATATGAGAGAGTGCAGGGGCCGATAGTAGTGATTAAGGAAGGATTAGAACCAGTTTATTTTTGGGATTCTTTTTCAAACTTGTTACCTTTGATGGACAAATCATGCAATGGAAACAACCCTGGGGAATCAAAGGGCAAGATTTGTGCTGGTGAGAGAAAAGTAGACTTATATGATGTTGATTTTGAGATTTTTCAGAAGGCTATTACTGGTGGTTTTGCTCCTCCATTTGCTTCATCAGAGAATGAACATGAAACCCGTCTTCCTGCTAGAGAAAGCAATTGGAGTGTGCTAAGGAGAAAGTTTGCTTCTGGCATTATGAAGGAGTTTGTATCTGCTTCTAGAATCTTACTTTCTAGAGCCTATTCAGAGTCTATGATGGTGGTACATCCAAGTGCTAAATCTACTTCTCCTTCTTCGTCATCATTATCTTCTTCCTCGTCTTCTTCACCTAGTTTTCATTCTCCAGATTCCCTCTCTTCTGACTCTAGTACAAACTCAAAGTTCTTTTCAGAATCTCCTTTGGATTCTCCATCCGCTGCTTCACGTTCATTTCCAGTAACTTTGTCAAACTTTTCTAACCCATCTCACCTTTCATCTGTAACTCCCTTTGAGCCCATACAAGATGGTCCAAAACTTTCTGTCGAGGTAGCTTCAGGACCTAACTCTCAGTCATTCCCATTACCATCTAAAAAGCTTTCACCTTCCCTTGCAGAACGCAGAGGTAGCTTATCGAAGACTCTGAAATTGCCATTGATGACTGATAAAAGGCGGGCAACAAGTAATCCTTCAAGTTTCCTTTCCAAGAGAGAAGATGATGAAACGAGGGACACTGCTAGTTACTCTTTAAATGAAACGTATAGTAAGGAAAATTACTTAGAATCCATTTGTAGTGTTGAAAGGGAAGGGGAAGATTCAACCCAGAAGTGTAAGGAAATTGTTCAAAATGGAGTCCAAGGCAGGGAAAGGAGCCCAAATTTATTCATGGGAAGAGGCGAAGTGTCCAATATCTTAAATAGAGTGGAAGGAACTGGCTCAACACAATGTGTTCAACCTTTGGTTTATAGTTGGCCCTGCTTAGAAAAGACTGCAGCATTCAATGCAACTTACCTGGATTCTAAAGCTGCTTGGGCAATTTTCTCACCAAATAGAGGCTTATCCAAGAAAGATGAAAGGTTGTTGTATCTTTGGGTAGGTAGTTCTTTTGACCCTGACAAGTGTCGGATTCATTTAGATAGTGATGAAGAGATAGAAAATTTAGAAAAGATTGACTGGAGTCTAGTGGGCCGCCATGTTCTTACTAAGCTGGGAATGCCAGAAGAGACTGAGATCAAGGTTATTAAGGAAGACGAAGAAACAGAGGAATTTCTTGCATTATTGAGTCTGATGTAA 2505 41.48 MVGIEDSNSGNSRAPPPLSGNRKLFWRSASWSSSRTSHNPESEENDGLDLNSNIPNSNGQSRRFPAPLTPRSQQNCKARSCLPPLQPLSIARRSLDEWPKAGSDDIGEWPQPPTPSGRRNGENLKLDLSTIQRDTDKSGGLVKRDKIAFFDKECSKVAEHVYLGGDAVARDRDILKQNGITHILNCVGFVCPEYFKTDFVYRTLWLQDSPSEDITSILYDVFDYFEDVREEGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQYVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRMYRIAPHSSYDPLHLVPKLLNDPSPSALDSRGAFIIHIPSMMYVWIGKNCDAIMERDARGAVCQIVRYERVQGPIVVIKEGLEPVYFWDSFSNLLPLMDKSCNGNNPGESKGKICAGERKVDLYDVDFEIFQKAITGGFAPPFASSENEHETRLPARESNWSVLRRKFASGIMKEFVSASRILLSRAYSESMMVVHPSAKSTSPSSSSLSSSSSSSPSFHSPDSLSSDSSTNSKFFSESPLDSPSAASRSFPVTLSNFSNPSHLSSVTPFEPIQDGPKLSVEVASGPNSQSFPLPSKKLSPSLAERRGSLSKTLKLPLMTDKRRATSNPSSFLSKREDDETRDTASYSLNETYSKENYLESICSVEREGEDSTQKCKEIVQNGVQGRERSPNLFMGRGEVSNILNRVEGTGSTQCVQPLVYSWPCLEKTAAFNATYLDSKAAWAIFSPNRGLSKKDERLLYLWVGSSFDPDKCRIHLDSDEEIENLEKIDWSLVGRHVLTKLGMPEETEIKVIKEDEETEEFLALLSLM 834
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56368187 56371895 - Conep01aG0137000.1 Cone1ag1316 432007

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1316 834 ProSiteProfiles Dual specificity protein phosphatase domain profile. 153 295 IPR020422 GO:0006470(InterPro)
Cone1ag1316 834 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 148 294 IPR029021 -
Cone1ag1316 834 MobiDBLite consensus disorder prediction 1 16 - -
Cone1ag1316 834 PANTHER MKPA PROTEIN 8 831 - -
Cone1ag1316 834 CDD DSP 154 288 - -
Cone1ag1316 834 MobiDBLite consensus disorder prediction 583 651 - -
Cone1ag1316 834 Pfam Dual specificity phosphatase, catalytic domain 161 291 IPR000340 GO:0016311(InterPro)
Cone1ag1316 834 ProSitePatterns Tyrosine specific protein phosphatases active site. 237 247 IPR016130 GO:0016311(InterPro)
Cone1ag1316 834 MobiDBLite consensus disorder prediction 46 80 - -
Cone1ag1316 834 SMART dsp_5 153 292 IPR020422 GO:0006470(InterPro)
Cone1ag1316 834 MobiDBLite consensus disorder prediction 588 602 - -
Cone1ag1316 834 MobiDBLite consensus disorder prediction 1 81 - -
Cone1ag1316 834 MobiDBLite consensus disorder prediction 502 549 - -
Cone1ag1316 834 SUPERFAMILY Actin depolymerizing proteins 300 403 - -
Cone1ag1316 834 MobiDBLite consensus disorder prediction 99 122 - -
Cone1ag1316 834 Gene3D Protein tyrosine phosphatase superfamily 135 295 IPR029021 -
Cone1ag1316 834 Gene3D Severin 304 399 IPR029006 -
Cone1ag1316 834 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 212 273 IPR000387 GO:0016311(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1316 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1316 Cone-Chr1:56368187 Cone8ag0701 Cone-Chr8:7076874 8.86E-148 dispersed
Cone1ag1316 Cone-Chr1:56368187 Cone5ag0297 Cone-Chr5:1254999 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g228 Blo04g00099 Blo13g00894 . . Bpe04g01698 . . Bma08g01128 Cmo04g00237 Cmo04g01282 Cma04g01207 Cma04g00232 Car04g01109 . . . Cpe01g00201 . . . . . . . . . . . . . . Cone1ag1316 Cone5ag0297 . . . . Chy10g00579 Cme10g00858 . . . . Bpe04g01698 . . . . . . . . . . Cpe01g01110 . . . . . . . . . . . . . . . Lsi04g00858 Csa05g00673 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone8ag0143 . 93 660 Protein tyrosine phosphatase (PTP) family AT3G50110 60.7 4.9e-185 645.2
Cone3ag0992 . 43 618 Protein tyrosine phosphatase (PTP) family AT3G50110 57.8 6.9e-179 624.8
Cone10ag1013 . 35 522 Protein tyrosine phosphatase (PTP) family AT3G50110 63.5 9.4e-176 614.4
Cone4ag0515 . 1 371 Protein tyrosine phosphatase (PTP) family AT5G39400 58.7 3.1e-135 479.2
Cone7ag0488 . 1 291 Protein tyrosine phosphatase (PTP) family AT5G39400 52.8 5.3e-95 345.5
Cone11ag1023 . 15 858 Protein tyrosine phosphatase (PTP) family AT3G10550 69.5 0.0e+00 1171.0
Cone18ag0555 . 9 555 Protein tyrosine phosphatase (PTP) family AT3G10550 68.4 1.7e-217 753.4
Cone18ag0556 . 1 138 Protein tyrosine phosphatase (PTP) family AT3G10550 58.7 3.8e-39 161.0
Cone11ag1023 . 13 858 Protein tyrosine phosphatase (PTP) family AT5G04540 66.4 0.0e+00 1112.8
Cone18ag0555 . 9 555 Protein tyrosine phosphatase (PTP) family AT5G04540 68.6 6.9e-219 758.1
Cone2ag0575 . 1 1220 Protein tyrosine phosphatase (PTP) family AT5G58160 51.8 9.9e-302 1033.9
Cone17ag0984 . 1 1309 Protein tyrosine phosphatase (PTP) family AT5G58160 50.9 3.0e-290 995.7
Cone20ag0324 . 1 1253 Protein tyrosine phosphatase (PTP) family AT5G58160 53.0 1.4e-284 976.9
Cone15ag0895 . 1 399 Protein tyrosine phosphatase (PTP) family AT5G58160 55.3 1.8e-125 448.4
Cone20ag0690 . 24 264 Protein tyrosine phosphatase (PTP) family AT1G71860 63.9 2.6e-87 319.7
Cone13ag0255 . 22 932 Protein tyrosine phosphatase (PTP) family AT5G23720 63.5 0.0e+00 1077.0
Cone14ag0823 . 33 172 Protein tyrosine phosphatase (PTP) family AT3G06110 59.3 4.5e-45 178.3
Cone12ag1514 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 79.3 2.5e-73 272.3
Cone8ag1559 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 7.9e-72 267.3
Cone5ag0384 . 90 373 Protein tyrosine phosphatase (PTP) family AT3G52180 69.7 1.3e-116 416.8
Cone1ag1393 . 90 371 Protein tyrosine phosphatase (PTP) family AT3G52180 67.0 1.2e-109 393.7
Cone5ag0149 . 21 288 Protein tyrosine phosphatase (PTP) family AT3G10940 70.6 5.6e-112 401.4
Cone1ag1626 . 1 172 Protein tyrosine phosphatase (PTP) family AT3G10940 57.8 4.1e-54 209.1
Cone18ag1361 . 140 587 Protein tyrosine phosphatase (PTP) family AT3G01510 70.8 2.0e-196 682.6
Cone11ag0116 . 136 534 Protein tyrosine phosphatase (PTP) family AT3G01510 61.7 6.3e-158 554.7
Cone12ag1505 . 3 209 Protein tyrosine phosphatase (PTP) family AT2G32960 55.0 7.4e-71 264.6
Cone5ag1838 . 22 186 Protein tyrosine phosphatase (PTP) family AT2G32960 59.5 5.0e-67 251.9
Cone10ag1396 . 45 206 Protein tyrosine phosphatase (PTP) family AT2G32960 62.2 4.2e-66 248.8
Cone8ag1552 . 3 194 Protein tyrosine phosphatase (PTP) family AT2G32960 55.5 1.0e-64 244.2
Cone5ag0937 . 4 161 Protein tyrosine phosphatase (PTP) family AT2G32960 52.1 8.2e-54 208.0
Cone12ag0399 . 1 334 Protein tyrosine phosphatase (PTP) family AT2G35680 57.0 1.7e-99 360.1
Cone8ag0418 . 1 335 Protein tyrosine phosphatase (PTP) family AT2G35680 56.3 3.2e-98 355.9
Cone4ag0974 . 12 267 Protein tyrosine phosphatase (PTP) family AT2G35680 54.6 1.8e-77 287.0
Cone7ag1160 . 25 267 Protein tyrosine phosphatase (PTP) family AT2G35680 53.5 4.1e-77 285.8
Cone4ag0974 . 30 219 Protein tyrosine phosphatase (PTP) family AT5G56610 51.5 1.6e-46 183.3
Cone8ag0418 . 38 210 Protein tyrosine phosphatase (PTP) family AT5G56610 51.4 1.4e-42 170.2
Cone12ag0399 . 38 210 Protein tyrosine phosphatase (PTP) family AT5G56610 50.9 4.0e-42 168.7
Cone5ag1838 . 15 187 Protein tyrosine phosphatase (PTP) family AT4G03960 71.1 3.8e-75 278.5
Cone12ag1505 . 40 209 Protein tyrosine phosphatase (PTP) family AT4G03960 74.7 5.0e-75 278.1
Cone10ag1396 . 23 206 Protein tyrosine phosphatase (PTP) family AT4G03960 69.5 3.6e-73 271.9
Cone8ag1552 . 16 194 Protein tyrosine phosphatase (PTP) family AT4G03960 70.9 1.3e-70 263.5
Cone5ag0937 . 15 165 Protein tyrosine phosphatase (PTP) family AT4G03960 63.6 4.0e-56 215.3
Cone1ag1691 . 16 130 Protein tyrosine phosphatase (PTP) family AT4G03960 60.0 3.4e-39 159.1
Cone5ag0937 . 1 196 Protein tyrosine phosphatase (PTP) family AT3G02800 69.0 2.4e-80 295.8
Cone1ag1691 . 16 158 Protein tyrosine phosphatase (PTP) family AT3G02800 72.7 4.2e-61 231.9
Cone5ag1838 . 24 182 Protein tyrosine phosphatase (PTP) family AT3G02800 62.9 6.7e-59 224.6
Cone12ag1505 . 45 204 Protein tyrosine phosphatase (PTP) family AT3G02800 61.9 5.7e-58 221.5
Cone10ag1396 . 36 203 Protein tyrosine phosphatase (PTP) family AT3G02800 60.1 1.3e-57 220.3
Cone8ag1552 . 45 196 Protein tyrosine phosphatase (PTP) family AT3G02800 63.8 1.4e-56 216.9
Cone1ag1316 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 70.2 5.2e-67 253.4
Cone5ag0297 . 31 219 Protein tyrosine phosphatase (PTP) family AT3G55270 69.1 5.2e-67 253.4
Cone4ag0515 . 1 371 Protein tyrosine phosphatase (PTP) family AT5G39400 58.7 3.1e-135 479.2
Cone7ag0488 . 1 291 Protein tyrosine phosphatase (PTP) family AT5G39400 52.8 5.3e-95 345.5
Cone3ag0992 . 1 618 Protein tyrosine phosphatase (PTP) family AT3G19420 66.2 8.9e-232 800.4
Cone10ag1013 . 1 515 Protein tyrosine phosphatase (PTP) family AT3G19420 72.4 8.1e-217 750.7
Cone8ag0143 . 83 664 Protein tyrosine phosphatase (PTP) family AT3G19420 60.7 9.0e-200 694.1
Cone8ag0143 . 93 660 Protein tyrosine phosphatase (PTP) family AT3G50110 60.7 4.9e-185 645.2
Cone3ag0992 . 43 618 Protein tyrosine phosphatase (PTP) family AT3G50110 57.8 6.9e-179 624.8
Cone10ag1013 . 35 522 Protein tyrosine phosphatase (PTP) family AT3G50110 63.5 9.4e-176 614.4
Cone2ag0575 . 1 1220 Protein tyrosine phosphatase (PTP) family AT5G58160 51.8 9.9e-302 1033.9
Cone17ag0984 . 1 1309 Protein tyrosine phosphatase (PTP) family AT5G58160 50.9 3.0e-290 995.7
Cone20ag0324 . 1 1253 Protein tyrosine phosphatase (PTP) family AT5G58160 53.0 1.4e-284 976.9
Cone15ag0895 . 1 399 Protein tyrosine phosphatase (PTP) family AT5G58160 55.3 1.8e-125 448.4
Cone11ag1023 . 15 858 Protein tyrosine phosphatase (PTP) family AT3G10550 69.5 0.0e+00 1171.0
Cone18ag0555 . 9 555 Protein tyrosine phosphatase (PTP) family AT3G10550 68.4 1.7e-217 753.4
Cone18ag0556 . 1 138 Protein tyrosine phosphatase (PTP) family AT3G10550 58.7 3.8e-39 161.0
Cone11ag1023 . 13 858 Protein tyrosine phosphatase (PTP) family AT5G04540 66.4 0.0e+00 1112.8
Cone18ag0555 . 9 555 Protein tyrosine phosphatase (PTP) family AT5G04540 68.6 6.9e-219 758.1
Cone11ag1360 . 68 247 Protein tyrosine phosphatase (PTP) family AT3G44620 65.5 1.5e-71 266.9
Cone18ag0218 . 43 248 Protein tyrosine phosphatase (PTP) family AT3G44620 59.4 1.5e-71 266.9
Cone13ag1383 . 1 677 Protein tyrosine phosphatase (PTP) family AT3G09100 70.8 9.6e-288 986.5
Cone19ag1373 . 1 673 Protein tyrosine phosphatase (PTP) family AT3G09100 70.2 3.4e-285 978.0
Cone19ag1373 . 5 673 Protein tyrosine phosphatase (PTP) family AT5G01290 65.6 2.0e-261 899.0
Cone13ag1383 . 5 677 Protein tyrosine phosphatase (PTP) family AT5G01290 64.6 1.9e-259 892.5
Cone13ag1383 . 79 688 Protein tyrosine phosphatase (PTP) family AT5G28210 56.8 1.2e-188 657.1
Cone19ag1373 . 75 684 Protein tyrosine phosphatase (PTP) family AT5G28210 56.5 4.4e-186 648.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004035 1 5 2 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 4 1 44