Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1326 ATGGAGAAAACAGTAGTCTGGTTACATATACTGATCCTTTTCACCTCTCGCTTCCTTGCAACCTTCTCTCAAGATATTGTTGATACAAGTGACTGGCTAAGCGTCGACTGTGGCAACGATGACCCTCTTGCCGTGATTAGCAGTCGTCTAGATTGGGTAGCTGATGATGGTTTTACCAACACCGGCACTAACCAGAAAGTTTTAAAAAGTCAACCAGACCATCAGGAAATGAACACGCTTCGATCTTTCCCTCATCAATCCCAACCAAATTGTTACACCTTACCCGTTATCCCACAAACCATACGGTACCTCGTCCGAGCCGGATTCTATTATGGCAACTACGATAATCTTAATAAGCCTCCCAAATTTGACCTTCTTATCGATGATAAGAAATGGTCGACGGTTGACACATCAGCATCCGCCGGTGGGCCCATGTATGAAGAGCTTATGTACGTGACTCGTGGGTCCGGAAACGTTAAATTGTGCTTAGCGCAAATTAAAGACGGAGGTGTTCCGGTCATTTCCTCGATTGAGATTGTTCCGACCGGGCAAAATTTGTACTTGACGATGGAAGAAAACCGCGATTATTCCTTAGTCACTAGAACCTACTTCGGTTTCAATCACGGCGATATCGGGTATACCGGGTTAATTTCGCAAGAAAAGTACAACAGGATATGGAAATGGGGAGCAACTCCAGTGAATTGTATTGAAACACCTTTAGGAGTGGGTTTCACTACTCCAGAAAATGACCCTCCAGTTGATGTGTATACAAACGGCGTCGTAGCAAGAGATACATTTGATACAATAACATTGCTCGTCAATTTCACAGAAACAACCAATCCTCAATCTTCAGCTTACTTTGTGCTTTATCTGGCTCCAGAGGAGCAGCTTTTCTCACAAAACGTCAGCACCATTCAGATCATCATCGACGGTCAGATTCAGGACACGGTGACGCTTGGCGGCGACTTGACGGTGCTTTCGTTCTACCCGCTAACCGTTCCTGGACCCACTAGTACTATAAAGTTGGTCCCCACCAATTCGTCCACCTTGCCGCCGTCAATCAGCGCGGTGGAAGTGTTTACAAGAGCGGATCTCGCCGGCGAATCTTCGTCCTCCGATCACCCATCCACACGTCACTTTTCTGCGTATTTTGTTCTTATGTTTACCAAATCCAACGGCTTTGGTATGAAGAATCCACGAGGAAAACGTGCAGCAGAAAAGGACTTGAACTCGAGTCATGCTCGGACAGTAACCGCAAAACCGCTGAGCAGCCGCAGGGATGAGACTTACTCCAATCTTCTCTCGGATCAAAATTCTCCAATCTTCATCGATACCAATACAGTTTCAAATTCTTCTACGCCCACCATTTATTCAGATCTGTTCAAAACTGCAAGGGTGCTTAAGACTGCAACTAGTTACACCTTCCCTATATCCAAACATGGCTACCACTCTATCCGCCTCTACTTCCATCCCTTTGCACATAAATACTACACCTTGACCATTGCAACATTCTCTGTCTCTGCTCAAAACTTCACCCTTCTCAAAGATTACCGATCACAGTCTGGCTCTGTAATAAAGGAATATTCCTTGAACATAACTTCTGACACTTTAGTCCTCACGTTCACTCCTTTGAACAACAATTCAATAGCATTCATCAATGCCTTAGAAGTCGTTTCGATCCCAGACAACGTCTTCCCGGTCGATGTTCGGACAATTAGTCAACCAGGTAGTAACCATAATCTACAGAACCGAGCAGTGGAGACGCTTATGAGAGTGAACATGGGAAACGTGATTGTTCTTCCTGAAAACGATACACTGTCTCGCCTCTGGGTTCCAGATGGTATGTTTCTTACTCACTCTAACCTCGTAAAGTTTGTTTCGAATAAAAAAGCTGTTAATTTCAGTAGAGGCTTTCCAACGGAAGATATTGCTCCTCATTCCGTTTACTCTACGGCAACTAAGTTGTTCTCTGAATTCGACGAGAGGATTCTTGCTAACGTGACGTGGAGTTTCGACATTGATCCTGGTTTCGACTATCTTGTCCGGTTTCATTTCTGTGACATTGTTAGTACTTCTCTCGGATCGCTTTTCTTCAGTGTTTTTGTCAACTCGTGCCTAGTTGACCGGCATGTCGATCTTAGTAGTCTGACTTCAAACACACTCGGTGCTCCATATGTCATGAATGTAATAACAAGGGTAGATGATGTCGGAAAGCTAAATGTAAGTGTGGGCCCGTCTCGGTTGGGTAATCCTTACCCGAACGCCATTCTTAACGGGTTAGAGATCATGAAACTGAGTGATTCTTTGAACAGTCTTGATGGAACGGACCATGTTTTGGCCTTGAAGAAAAAGATCTCCAAGATGAAAGTTGGTCTTATAATCGGTTTTTCGGTTGGAATAATTGTTACTTTTGTTCTTGTTATGACTCTGCTAGCCTTATGCATAAGAAGAAGAAGAAAGTTGGCATCCATTGATAATGCTAATAGGCAAGAAGATAAATTTTCGGCAAACGGAACGGATAGGAAGTATCCGATCTTTTCGAATTCCAACAAGAGGTATCGTTTTCCGTTTTCCATGATTCAAGAGGCCACAGATAATTTTAGTGAAAGTTTAATTATCGGGGTAGGCGGATTCGGAAAGGTTTATAAGGGAGTTTTGAGGGACAACACCCAAGTGGCAGTTAAGAGGGGATCTCCGGAATCAAGGCAGGGTCTTGTAGAGTTTTGGACCGAAATCGAAATGCTCTCTCATTTTCGTCATAGGCATTTAGTATCTCTAATAGGGTATTGTGACGAAAGGATGGAAATGATCATAATTTACGAGTACATGGAGAATGGTAGCCTTAGAAACCATTTGTACGATTCGGATCTTCCAAGGTTAAGTTGGAGGCAGAGGCTCGAGATATGTATTGGATCGGCTAGAGGGCTTCATTATCTTCACACCGGTTCGGCGAAAGCCGTTATTCATCGTGATGTAAAATCCGCAAACATTCTTCTAGACGATAATTATATGGCTAAGGTTGCAGATTTCGGAATTTCAAAGGCGGGCCCAGAAATTGACCGAACCCATGTAAGTACAGCAGTGAAAGGGAGTTTCGGGTATTTAGATCCAGAGTATTTGACAAGGCAGCAACTGACGGAAAAATCTGACGTGTACTCCTTTGGAGTGGTCTTGTTTGAGGTTGTTTGTGGTAGACCAGTTATTGATCCATCTCTTCCTAGAGAACGGGTGAATTTGATTGAATGGGTGATGAAATGGAAGAGTAAGGACCGGTTTGAGGAGATTGTTGATCCGTTTCTTGAGGGACAAGTAGAGTTCGATTCGTTGAGGAAATTTGTAGAGATAGCCGATAAATGCTTGGCGGAATGTGGACTTGATCGGCCGACGATGGGTGATGTTTTGTGGAATTTAGAGTGTGCATTTCAACTACTTCAAGGGAATGAAAATCTGAATGATGTGGGCCCGTCTTCTTCTTGGGTGAATCCGGTGAATCATTGGGAGAGCAGTGTGTCCATCATTACACAATCTAGCATTGCAAGTGCAGATGGGGTTTCATTGAGTAAGGTGTTCGCTCAAATGGTGGGGGAGGATACGAGGTAG 3600 43.92 MEKTVVWLHILILFTSRFLATFSQDIVDTSDWLSVDCGNDDPLAVISSRLDWVADDGFTNTGTNQKVLKSQPDHQEMNTLRSFPHQSQPNCYTLPVIPQTIRYLVRAGFYYGNYDNLNKPPKFDLLIDDKKWSTVDTSASAGGPMYEELMYVTRGSGNVKLCLAQIKDGGVPVISSIEIVPTGQNLYLTMEENRDYSLVTRTYFGFNHGDIGYTGLISQEKYNRIWKWGATPVNCIETPLGVGFTTPENDPPVDVYTNGVVARDTFDTITLLVNFTETTNPQSSAYFVLYLAPEEQLFSQNVSTIQIIIDGQIQDTVTLGGDLTVLSFYPLTVPGPTSTIKLVPTNSSTLPPSISAVEVFTRADLAGESSSSDHPSTRHFSAYFVLMFTKSNGFGMKNPRGKRAAEKDLNSSHARTVTAKPLSSRRDETYSNLLSDQNSPIFIDTNTVSNSSTPTIYSDLFKTARVLKTATSYTFPISKHGYHSIRLYFHPFAHKYYTLTIATFSVSAQNFTLLKDYRSQSGSVIKEYSLNITSDTLVLTFTPLNNNSIAFINALEVVSIPDNVFPVDVRTISQPGSNHNLQNRAVETLMRVNMGNVIVLPENDTLSRLWVPDGMFLTHSNLVKFVSNKKAVNFSRGFPTEDIAPHSVYSTATKLFSEFDERILANVTWSFDIDPGFDYLVRFHFCDIVSTSLGSLFFSVFVNSCLVDRHVDLSSLTSNTLGAPYVMNVITRVDDVGKLNVSVGPSRLGNPYPNAILNGLEIMKLSDSLNSLDGTDHVLALKKKISKMKVGLIIGFSVGIIVTFVLVMTLLALCIRRRRKLASIDNANRQEDKFSANGTDRKYPIFSNSNKRYRFPFSMIQEATDNFSESLIIGVGGFGKVYKGVLRDNTQVAVKRGSPESRQGLVEFWTEIEMLSHFRHRHLVSLIGYCDERMEMIIIYEYMENGSLRNHLYDSDLPRLSWRQRLEICIGSARGLHYLHTGSAKAVIHRDVKSANILLDDNYMAKVADFGISKAGPEIDRTHVSTAVKGSFGYLDPEYLTRQQLTEKSDVYSFGVVLFEVVCGRPVIDPSLPRERVNLIEWVMKWKSKDRFEEIVDPFLEGQVEFDSLRKFVEIADKCLAECGLDRPTMGDVLWNLECAFQLLQGNENLNDVGPSSSWVNPVNHWESSVSIITQSSIASADGVSLSKVFAQMVGEDTR 1199
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56415284 56420625 + Conep01aG0138100.1 Cone1ag1326 432017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1326 1199 ProSitePatterns Protein kinases ATP-binding region signature. 873 895 IPR017441 GO:0005524(InterPro)
Cone1ag1326 1199 Gene3D - 584 766 - -
Cone1ag1326 1199 Gene3D - 414 560 - -
Cone1ag1326 1199 SUPERFAMILY Protein kinase-like (PK-like) 843 1137 IPR011009 -
Cone1ag1326 1199 Gene3D Transferase(Phosphotransferase) domain 1 943 1152 - -
Cone1ag1326 1199 Pfam Protein tyrosine and serine/threonine kinase 873 1065 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone1ag1326 1199 PANTHER OS07G0107800 PROTEIN-RELATED 432 783 - -
Cone1ag1326 1199 ProSiteProfiles Protein kinase domain profile. 867 1144 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag1326 1199 MobiDBLite consensus disorder prediction 411 425 - -
Cone1ag1326 1199 Pfam Malectin-like domain 430 764 IPR024788 -
Cone1ag1326 1199 Pfam Malectin-like domain 35 361 IPR024788 -
Cone1ag1326 1199 MobiDBLite consensus disorder prediction 400 425 - -
Cone1ag1326 1199 FunFam Receptor-like protein kinase FERONIA 943 1157 - -
Cone1ag1326 1199 Gene3D Phosphorylase Kinase; domain 1 828 942 - -
Cone1ag1326 1199 CDD STKc_IRAK 873 1138 - -
Cone1ag1326 1199 ProSitePatterns Serine/Threonine protein kinases active-site signature. 987 999 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone1ag1326 1199 FunFam Receptor-like protein kinase FERONIA 585 767 - -
Cone1ag1326 1199 SMART serkin_6 867 1140 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag1326 1199 FunFam receptor-like protein kinase FERONIA 831 942 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1326 Cone-Chr1:56415284 Cone9ag0144 Cone-Chr9:624888 2.68E-216 dispersed
Cone1ag0678 Cone-Chr1:6360381 Cone1ag1326 Cone-Chr1:56415284 9.65E-259 wgd
Cone1ag1326 Cone-Chr1:56415284 Cone5ag0310 Cone-Chr5:1304876 0 wgd
Cone1ag1326 Cone-Chr1:56415284 Cone5ag1186 Cone-Chr5:5339864 2.36E-253 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82505 PF01535 PPR 1.60E-06 CL0020 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1326 - - - 0.0