Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1332 ATGGCTTGGTTTCTCTGTTCTGGAAATCCGAATAAGAAAGCGAAGAAGCTAAGTAAGAACCCAGAGGATCAGATCCTGTCATCAACTCCAGAAAAGCTTAAAGTAAATCCGGCCATGATTATGAAGGAGTCTAAGGGTGAAAAATCCGAACACATTGGAGCACATACGTTTACATTCCGAGAATTAGCAAATGCAACGAGAAATTTCCAAGCAGATTGTCTTCTAGGCGAAGGAGGTTTTGGCCGAGTCTATAAAGGACGCTTGGATAGCACAAACCAGGTTGTAGCAATAAAGCAACTCGACCGAAACGGGCTTCAAGGAAACAGAGAATTCCTTGTAGAAGTACTAATGTTAAGCCTCCTTCACCATCCTAATCTCGTCAACCTAATCGGCTACTGTGCCGATGGAGATCAAAGACTCTTGGTTTATGAATACATGCCGCTTGGCTCTTTAGAAGACCATCTACACGATCTTCCACATGATAAAACACGGCTCGATTGGAATATGCGGATGAAAATAGCGGCTGGTGCTGCAAAGGGCTTGGAATATTTACACGACAAAGCTAACCCGCCTGTCATTTATCGCGATTTAAAGTGCTCAAACATTTTGCTAGGTGAAGACTATCAACCCAAGCTATCCGACTTTGGCTTGGCTAAATTGGGGCCCGTGGGGGATAAAACCCACGTGTCAACAAGAGTTATGGGAACTTATGGATATTGTGCGCCTGAATATGCCATGACCGGTCAACTCACTTTGAAATCTGACGTTTATAGTTTTGGAGTTGTGCTTCTAGAAATTATTACGGGTAGAAAAGCAATTGACAATTCACGAGCGGCAGGGGAACATAATTTAGTAGCATGGGCACGGCCATTGTTTAAGGATAGAAGGAAATTCGCACAAATTGTGGATCCATTGTTGCAAGGACAGTATCCTGTTAGAGGGTTGTACCAAGCTTTAGCAGTTGCTGCTATGTGTGTTCAAGAACAACCCAGTATAAGACCGCTTATAGCTGATGTCGTAACAGCCCTGACTTATCTTGCTTCCCAGAAATACGATCCGGAAACACAGTCGATCCAAAGCTCCCGATCAAGCTCATTGTCCACTCCTCGATTGAGAAGGGAACAGTTTTGA 1131 43.85 MAWFLCSGNPNKKAKKLSKNPEDQILSSTPEKLKVNPAMIMKESKGEKSEHIGAHTFTFRELANATRNFQADCLLGEGGFGRVYKGRLDSTNQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDLPHDKTRLDWNMRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGEDYQPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSRAAGEHNLVAWARPLFKDRRKFAQIVDPLLQGQYPVRGLYQALAVAAMCVQEQPSIRPLIADVVTALTYLASQKYDPETQSIQSSRSSSLSTPRLRREQF 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56450553 56452698 + Conep01aG0138700.1 Cone1ag1332 432023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1332 376 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524(InterPro)
Cone1ag1332 376 FunFam Serine/threonine-protein kinase PBS1 146 361 - -
Cone1ag1332 376 CDD STKc_IRAK 75 344 - -
Cone1ag1332 376 SUPERFAMILY Protein kinase-like (PK-like) 51 350 IPR011009 -
Cone1ag1332 376 FunFam Serine/threonine-protein kinase PBS1 41 145 - -
Cone1ag1332 376 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone1ag1332 376 Gene3D Phosphorylase Kinase; domain 1 39 145 - -
Cone1ag1332 376 Pfam Protein tyrosine and serine/threonine kinase 72 275 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone1ag1332 376 MobiDBLite consensus disorder prediction 356 376 - -
Cone1ag1332 376 ProSiteProfiles Protein kinase domain profile. 69 346 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag1332 376 SMART serkin_6 69 346 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag1332 376 PANTHER OS07G0668900 PROTEIN 30 363 - -
Cone1ag1332 376 Gene3D Transferase(Phosphotransferase) domain 1 146 367 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0778 Cone-Chr14:4523716 Cone1ag1332 Cone-Chr1:56450553 1.08E-191 dispersed
Cone18ag0311 Cone-Chr18:1529245 Cone1ag1332 Cone-Chr1:56450553 4.86E-178 dispersed
Cone18ag1447 Cone-Chr18:9726278 Cone1ag1332 Cone-Chr1:56450553 4.50E-125 dispersed
Cone1ag1332 Cone-Chr1:56450553 Cone7ag0170 Cone-Chr7:711534 1.03E-192 dispersed
Cone1ag0688 Cone-Chr1:6432681 Cone1ag1332 Cone-Chr1:56450553 2.64E-34 wgd
Cone1ag1332 Cone-Chr1:56450553 Cone10ag0271 Cone-Chr10:1290438 2.55E-205 wgd
Cone1ag1332 Cone-Chr1:56450553 Cone11ag1273 Cone-Chr11:9465606 2.54E-177 wgd
Cone1ag1332 Cone-Chr1:56450553 Cone3ag0298 Cone-Chr3:1540435 1.33E-200 wgd
Cone1ag1332 Cone-Chr1:56450553 Cone5ag0318 Cone-Chr5:1348653 6.43E-259 wgd
Cone1ag1332 Cone-Chr1:56450553 Cone5ag1197 Cone-Chr5:5414199 1.12E-167 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82506 PF00069 Pkinase 1.60E-46 CL0016 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1332 - - - 0.0