Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1335 ATGGAAGAAGAAGAACAGGAAGATCAAAACCGTACAGCAATGGAGGAAGATCGTGATTCCAGGACGACAATTTTAAATTCTTCCATAGTCAATGATGAAGAAATTCCCTCCTGCCGAGACGATGAAGACTCTGTTTTCATATTCGACATCTTGAAGAAAGAGAGTTCATCATCATCATCATCTCTTTCTCCGTCCGCCATAAAAAATGACGTCAGAGGCGGTTTCACGTCGGAGTCGTCGGAGTTTGTCAAGTTGAGGCTGGCTAACAACCCGTTTTCAAGATCGGCGTTGTCCACACAGTGGTTGAACCTATCGTTTGCTGAGTCAGCAGGTCAAAGTCAAAGAGAGGTGGTCAAAACCATGCAGCAGCAAAACGAGCAGCAGAAGATTAGAAAGAGCAGGAGAGGACCCAGGTCTCGGAGCTCTCAATACCGTGGCGTCACTTTTTACAGAAGAACTGGCCGATGGGAATCACATATTTGGGATTGTGGAAAGCAGGTGTACTTGGGTGGATTCGACACCGCTCATTCTGCAGCTAGAGCATATGATCAAGCTGCGATCAAGTTCCGTGGAGTGGAGGCTGATATCAACTTCAAACTAAGCGACTATGAAGAAGATCTGACACAGAAGAAGAATTTGAGTAAAGAAGAGTTCGTGCAGTTGTTACGTAGAAGTAGCACCGGATTGTCCAGAGCGAGCTCAAAATTTAGAGGGGCGACACTCCATACACGATGGGAAGCTCGAATGGGAAAAACTAACAATGGAGGCAGTCGTGATCACCATCTTGATCTAAGGCTTGGGATTTCTCTAGCATCTGATAGCAAGAATGGTTCAAAAGGGATTACTGATGAAGTAGAAGAGAAAAGAATGGGTTTTCTGAACTACCCTTATGCTGTTTATGAAGATGCCGACAGGAAGAGACTAAAGATAATGGAGGGTACTAAACAGGCTCATATTCTTACTATGGCCTCTTCCAAGCAACACCACCCAGCCCCTATATGGCCTGCAATTCATTCTAGGTTTTTACCAAACAATGGGGTACTGTTGCTATCCAATTTTAAGACAAAATCTACAGCTTACTGA 1083 44.51 MEEEEQEDQNRTAMEEDRDSRTTILNSSIVNDEEIPSCRDDEDSVFIFDILKKESSSSSSSLSPSAIKNDVRGGFTSESSEFVKLRLANNPFSRSALSTQWLNLSFAESAGQSQREVVKTMQQQNEQQKIRKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDQAAIKFRGVEADINFKLSDYEEDLTQKKNLSKEEFVQLLRRSSTGLSRASSKFRGATLHTRWEARMGKTNNGGSRDHHLDLRLGISLASDSKNGSKGITDEVEEKRMGFLNYPYAVYEDADRKRLKIMEGTKQAHILTMASSKQHHPAPIWPAIHSRFLPNNGVLLLSNFKTKSTAY 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56459580 56461118 + Conep01aG0139000.1 Cone1ag1335 432026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1335 360 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 70 263 - -
Cone1ag1335 360 MobiDBLite consensus disorder prediction 121 143 - -
Cone1ag1335 360 Gene3D AP2/ERF domain 142 200 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag1335 360 ProSiteProfiles AP2/ERF domain profile. 143 199 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag1335 360 MobiDBLite consensus disorder prediction 1 36 - -
Cone1ag1335 360 FunFam AP2-like ethylene-responsive transcription factor 142 201 - -
Cone1ag1335 360 CDD AP2 143 201 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag1335 360 Pfam AP2 domain 143 191 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag1335 360 SMART rav1_2 143 205 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag1335 360 SUPERFAMILY DNA-binding domain 142 200 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1335 Cone-Chr1:56459580 Cone8ag0138 Cone-Chr8:727322 3.74E-61 dispersed
Cone1ag0696 Cone-Chr1:6470469 Cone1ag1335 Cone-Chr1:56459580 9.17E-68 wgd
Cone1ag1335 Cone-Chr1:56459580 Cone10ag0265 Cone-Chr10:1265019 6.76E-59 wgd
Cone1ag1335 Cone-Chr1:56459580 Cone3ag0291 Cone-Chr3:1509147 6.23E-61 wgd
Cone1ag1335 Cone-Chr1:56459580 Cone5ag0321 Cone-Chr5:1359024 5.08E-180 wgd
Cone1ag1335 Cone-Chr1:56459580 Cone5ag1204 Cone-Chr5:5461638 4.23E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45504 PF00069 Pkinase 2.30E-47 CL0016 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1335 K09284 - vvi:100263240 241.121