Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone1ag1335 | ATGGAAGAAGAAGAACAGGAAGATCAAAACCGTACAGCAATGGAGGAAGATCGTGATTCCAGGACGACAATTTTAAATTCTTCCATAGTCAATGATGAAGAAATTCCCTCCTGCCGAGACGATGAAGACTCTGTTTTCATATTCGACATCTTGAAGAAAGAGAGTTCATCATCATCATCATCTCTTTCTCCGTCCGCCATAAAAAATGACGTCAGAGGCGGTTTCACGTCGGAGTCGTCGGAGTTTGTCAAGTTGAGGCTGGCTAACAACCCGTTTTCAAGATCGGCGTTGTCCACACAGTGGTTGAACCTATCGTTTGCTGAGTCAGCAGGTCAAAGTCAAAGAGAGGTGGTCAAAACCATGCAGCAGCAAAACGAGCAGCAGAAGATTAGAAAGAGCAGGAGAGGACCCAGGTCTCGGAGCTCTCAATACCGTGGCGTCACTTTTTACAGAAGAACTGGCCGATGGGAATCACATATTTGGGATTGTGGAAAGCAGGTGTACTTGGGTGGATTCGACACCGCTCATTCTGCAGCTAGAGCATATGATCAAGCTGCGATCAAGTTCCGTGGAGTGGAGGCTGATATCAACTTCAAACTAAGCGACTATGAAGAAGATCTGACACAGAAGAAGAATTTGAGTAAAGAAGAGTTCGTGCAGTTGTTACGTAGAAGTAGCACCGGATTGTCCAGAGCGAGCTCAAAATTTAGAGGGGCGACACTCCATACACGATGGGAAGCTCGAATGGGAAAAACTAACAATGGAGGCAGTCGTGATCACCATCTTGATCTAAGGCTTGGGATTTCTCTAGCATCTGATAGCAAGAATGGTTCAAAAGGGATTACTGATGAAGTAGAAGAGAAAAGAATGGGTTTTCTGAACTACCCTTATGCTGTTTATGAAGATGCCGACAGGAAGAGACTAAAGATAATGGAGGGTACTAAACAGGCTCATATTCTTACTATGGCCTCTTCCAAGCAACACCACCCAGCCCCTATATGGCCTGCAATTCATTCTAGGTTTTTACCAAACAATGGGGTACTGTTGCTATCCAATTTTAAGACAAAATCTACAGCTTACTGA | 1083 | 44.51 | MEEEEQEDQNRTAMEEDRDSRTTILNSSIVNDEEIPSCRDDEDSVFIFDILKKESSSSSSSLSPSAIKNDVRGGFTSESSEFVKLRLANNPFSRSALSTQWLNLSFAESAGQSQREVVKTMQQQNEQQKIRKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDQAAIKFRGVEADINFKLSDYEEDLTQKKNLSKEEFVQLLRRSSTGLSRASSKFRGATLHTRWEARMGKTNNGGSRDHHLDLRLGISLASDSKNGSKGITDEVEEKRMGFLNYPYAVYEDADRKRLKIMEGTKQAHILTMASSKQHHPAPIWPAIHSRFLPNNGVLLLSNFKTKSTAY | 360 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 56459580 | 56461118 | + | Conep01aG0139000.1 | Cone1ag1335 | 432026 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone1ag1335 | 360 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 70 | 263 | - | - | |
Cone1ag1335 | 360 | MobiDBLite | consensus disorder prediction | 121 | 143 | - | - | |
Cone1ag1335 | 360 | Gene3D | AP2/ERF domain | 142 | 200 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone1ag1335 | 360 | ProSiteProfiles | AP2/ERF domain profile. | 143 | 199 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone1ag1335 | 360 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
Cone1ag1335 | 360 | FunFam | AP2-like ethylene-responsive transcription factor | 142 | 201 | - | - | |
Cone1ag1335 | 360 | CDD | AP2 | 143 | 201 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone1ag1335 | 360 | Pfam | AP2 domain | 143 | 191 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone1ag1335 | 360 | SMART | rav1_2 | 143 | 205 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone1ag1335 | 360 | SUPERFAMILY | DNA-binding domain | 142 | 200 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone1ag1335 | Cone-Chr1:56459580 | Cone8ag0138 | Cone-Chr8:727322 | 3.74E-61 | dispersed | |
Cone1ag0696 | Cone-Chr1:6470469 | Cone1ag1335 | Cone-Chr1:56459580 | 9.17E-68 | wgd | |
Cone1ag1335 | Cone-Chr1:56459580 | Cone10ag0265 | Cone-Chr10:1265019 | 6.76E-59 | wgd | |
Cone1ag1335 | Cone-Chr1:56459580 | Cone3ag0291 | Cone-Chr3:1509147 | 6.23E-61 | wgd | |
Cone1ag1335 | Cone-Chr1:56459580 | Cone5ag0321 | Cone-Chr5:1359024 | 5.08E-180 | wgd | |
Cone1ag1335 | Cone-Chr1:56459580 | Cone5ag1204 | Cone-Chr5:5461638 | 4.23E-64 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45504 | PF00069 | Pkinase | 2.30E-47 | CL0016 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone1ag1335 | K09284 | - | vvi:100263240 | 241.121 |