Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone1ag1336 | ATGGCGGACGGTTCGACGAGTCCACCGGGTGGGAGTCACGAGTGCGGAGGCGAACAGAGCCACAATACTGGCTTTCGAGAGCAGGATCTGTACCTTCCGATCGCTAATATTAGTCGGATCATGAAGAAGGCTTTGCCAGCCAACGGCAAGATCGCTAAGGACGCTAAGGACACCGTTCAGGAATTCGTATCTGAATTCATCAGCTTCATCACCAGCGAGGCGAGTGATAAGTGTCAGAAAGAGAAGAGGAAGACGATTAATGGTGATGATTTGTTGTGGGCAATGGTAATGTTGGGATTCGAGGATTATGTTGAACCGCTTAAGGAGTATCTGAGGAGATACAGGGAGTTGGAGGGTGATACAAAAGGCAGTGGTGGTGATGACTCTGTTAAAAGAGAAGCCGTGGGGGGTCCTTCCTGGTCATAA | 426 | 49.77 | MADGSTSPPGGSHECGGEQSHNTGFREQDLYLPIANISRIMKKALPANGKIAKDAKDTVQEFVSEFISFITSEASDKCQKEKRKTINGDDLLWAMVMLGFEDYVEPLKEYLRRYRELEGDTKGSGGDDSVKREAVGGPSWS | 141 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 56471228 | 56473554 | + | Conep01aG0139100.1 | Cone1ag1336 | 432027 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone1ag1336 | 141 | SUPERFAMILY | Histone-fold | 28 | 125 | IPR009072 | GO:0046982(InterPro) | |
Cone1ag1336 | 141 | Gene3D | Histone, subunit A | 18 | 135 | IPR009072 | GO:0046982(InterPro) | |
Cone1ag1336 | 141 | PRINTS | CCAAT-binding transcription factor subunit A signature | 97 | 115 | - | - | |
Cone1ag1336 | 141 | PRINTS | CCAAT-binding transcription factor subunit A signature | 59 | 77 | - | - | |
Cone1ag1336 | 141 | PRINTS | CCAAT-binding transcription factor subunit A signature | 78 | 96 | - | - | |
Cone1ag1336 | 141 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 31 | 95 | IPR003958 | - | |
Cone1ag1336 | 141 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 18 | 126 | IPR027113 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER) | |
Cone1ag1336 | 141 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Cone1ag1336 | 141 | FunFam | Nuclear factor Y, subunit B1 | 21 | 119 | - | - | |
Cone1ag1336 | 141 | MobiDBLite | consensus disorder prediction | 118 | 141 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone1ag1336 | Cone-Chr1:56471228 | Cone8ag1366 | Cone-Chr8:10907603 | 3.06E-52 | dispersed | |
Cone1ag1336 | Cone-Chr1:56471228 | Cone10ag0264 | Cone-Chr10:1261543 | 2.90E-68 | wgd | |
Cone1ag1336 | Cone-Chr1:56471228 | Cone13ag1293 | Cone-Chr13:9673921 | 3.19E-63 | wgd | |
Cone1ag1336 | Cone-Chr1:56471228 | Cone19ag1279 | Cone-Chr19:8705820 | 6.79E-67 | wgd | |
Cone1ag1336 | Cone-Chr1:56471228 | Cone3ag0290 | Cone-Chr3:1505735 | 1.38E-68 | wgd | |
Cone1ag1336 | Cone-Chr1:56471228 | Cone5ag0323 | Cone-Chr5:1363391 | 3.47E-83 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45505 | PF07714 | PK_Tyr_Ser-Thr | 6.60E-48 | CL0016 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone1ag1336 | K08065 | - | rcu:8263378 | 231.106 |