Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1336 ATGGCGGACGGTTCGACGAGTCCACCGGGTGGGAGTCACGAGTGCGGAGGCGAACAGAGCCACAATACTGGCTTTCGAGAGCAGGATCTGTACCTTCCGATCGCTAATATTAGTCGGATCATGAAGAAGGCTTTGCCAGCCAACGGCAAGATCGCTAAGGACGCTAAGGACACCGTTCAGGAATTCGTATCTGAATTCATCAGCTTCATCACCAGCGAGGCGAGTGATAAGTGTCAGAAAGAGAAGAGGAAGACGATTAATGGTGATGATTTGTTGTGGGCAATGGTAATGTTGGGATTCGAGGATTATGTTGAACCGCTTAAGGAGTATCTGAGGAGATACAGGGAGTTGGAGGGTGATACAAAAGGCAGTGGTGGTGATGACTCTGTTAAAAGAGAAGCCGTGGGGGGTCCTTCCTGGTCATAA 426 49.77 MADGSTSPPGGSHECGGEQSHNTGFREQDLYLPIANISRIMKKALPANGKIAKDAKDTVQEFVSEFISFITSEASDKCQKEKRKTINGDDLLWAMVMLGFEDYVEPLKEYLRRYRELEGDTKGSGGDDSVKREAVGGPSWS 141
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56471228 56473554 + Conep01aG0139100.1 Cone1ag1336 432027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1336 141 SUPERFAMILY Histone-fold 28 125 IPR009072 GO:0046982(InterPro)
Cone1ag1336 141 Gene3D Histone, subunit A 18 135 IPR009072 GO:0046982(InterPro)
Cone1ag1336 141 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Cone1ag1336 141 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Cone1ag1336 141 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Cone1ag1336 141 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Cone1ag1336 141 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 18 126 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
Cone1ag1336 141 MobiDBLite consensus disorder prediction 1 23 - -
Cone1ag1336 141 FunFam Nuclear factor Y, subunit B1 21 119 - -
Cone1ag1336 141 MobiDBLite consensus disorder prediction 118 141 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1336 Cone-Chr1:56471228 Cone8ag1366 Cone-Chr8:10907603 3.06E-52 dispersed
Cone1ag1336 Cone-Chr1:56471228 Cone10ag0264 Cone-Chr10:1261543 2.90E-68 wgd
Cone1ag1336 Cone-Chr1:56471228 Cone13ag1293 Cone-Chr13:9673921 3.19E-63 wgd
Cone1ag1336 Cone-Chr1:56471228 Cone19ag1279 Cone-Chr19:8705820 6.79E-67 wgd
Cone1ag1336 Cone-Chr1:56471228 Cone3ag0290 Cone-Chr3:1505735 1.38E-68 wgd
Cone1ag1336 Cone-Chr1:56471228 Cone5ag0323 Cone-Chr5:1363391 3.47E-83 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45505 PF07714 PK_Tyr_Ser-Thr 6.60E-48 CL0016 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1336 K08065 - rcu:8263378 231.106