Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1339 ATGGAACACATCTTTGATGCCAAAACTGCTCTGAAAACACCATCACCACCAACAATGGCTGCTAATTCTGATCACCATGAGTTTTCTCCTTCCCCACCACCACAGACGCCTGCGACAGCAGTTGTGCTCAGTCCATGCGCCGCCTGTAGAATCCTTCGACGGAGATGCGTCGAGAAATGCGTCTTAGCTCCTTACTTCCCTCCAACTGACCCTCTCAAGTTCACCATTGCTCATCGAGTCTTTGGCGCTAGCAATATCATCAAATTCTTGCAGGAGCTTCCAGAGAGTCAGAGACCAGATGCAGTGAGCAGTATGGTATACGAAGCAAACGCAAGGATCAGAGATCCAGTTTACGGATGCGCCGGCGCAGTATGTCAGCTCCAGAAGCAAGTGAGCGACCTGCAGGCTCAGATAGCCAAGGCTCAAGCCGAGCTGGTCAACATGCAGCTCCAACAAGCCAATTTACTAGCCATATTTTGCATGGAACTAAGACAATCTAATCATCACCTTCATCATCACGATCATGATCAAGATCAACTAATCACCATGGTCGATAATACCATGCAACATCAACCGTACCAGATTGACACAACCTGCTTCCTCGACGACTCCACTTCCGGTACATGGGAAGCGCTCTGGACGTGA 645 49.3 MEHIFDAKTALKTPSPPTMAANSDHHEFSPSPPPQTPATAVVLSPCAACRILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPESQRPDAVSSMVYEANARIRDPVYGCAGAVCQLQKQVSDLQAQIAKAQAELVNMQLQQANLLAIFCMELRQSNHHLHHHDHDQDQLITMVDNTMQHQPYQIDTTCFLDDSTSGTWEALWT 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56487374 56488318 + Conep01aG0139400.1 Cone1ag1339 432030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1339 214 ProSiteProfiles LOB domain profile. 44 145 IPR004883 -
Cone1ag1339 214 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 44 175 - -
Cone1ag1339 214 Pfam Lateral organ boundaries (LOB) domain 45 142 IPR004883 -
Cone1ag1339 214 Coils Coil 124 151 - -
Cone1ag1339 214 MobiDBLite consensus disorder prediction 1 36 - -
Cone1ag1339 214 MobiDBLite consensus disorder prediction 15 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1339 Cone-Chr1:56487374 Cone8ag1587 Cone-Chr8:11808670 1.91E-42 dispersed
Cone1ag1339 Cone-Chr1:56487374 Cone11ag1283 Cone-Chr11:9521027 1.68E-64 wgd
Cone1ag1339 Cone-Chr1:56487374 Cone11ag1078 Cone-Chr11:8438866 4.79E-61 wgd
Cone1ag1339 Cone-Chr1:56487374 Cone18ag0498 Cone-Chr18:2433576 1.27E-63 wgd
Cone1ag1339 Cone-Chr1:56487374 Cone5ag0326 Cone-Chr5:1378722 1.09E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45506 PF14380 WAK_assoc 3.50E-06 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1339 - - - 0.0