Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1357 ATGGGATCAATAGATCATAATGGAAACGGCATCGTTAACGGATCATTTTGCATTAACGAATCCGACCCGTTGAACTGGGGCATGGCAGCTGAGTCGCTGAAAGGGAGCCATTTGGAAGAGGTGAAGAGAATGGTGGAGGAATATAGGAAGCCAATGGTCAGGCTTGGTGGTGAGACCTTGACCATAGCTCAGGTGGCTGCAATTGCAGCTCATGACGGTTCTGTGGCGGTTGAGCTATCCGAGTCGGCTCGAGCTAGGGTCAAGGTGAGCAGTGACTGGGTGATGGAGAGCATGAATAAAGGGACGGATAGTTATGCCGTCACTACTGGTTTTGGTGCAACCTCTCATAGGAGAACCAGGCAAGGAGGAGCCCTTCAGAAGGAGCTTACTAGGTTCTTGAATGCTGGAATCTTTGGAAATGGGAAAGAATCATGCAACACATTGCCCCACTCAGCAACCAGAGCAGCCATGCTGGTGAGGACCAACACACTGCTACAAGGCTACTCAGGCATTAGATTTGAAATCTTAGAAGCCATGACCAAACTGCTCAACAACAACGTAACACCCTGTCTCCCTCTCAGAGGCACCATCACTGCATCTGGAGACTTGGTCCCTCTCTCATACATTGCTGGTCTTTTGACAGGCAGGCCCAATTCAAAAGCTATTGGGCCCAATGGACAACCCCTCAACCCCACGGAGGCCTTCCAACAAGCTGGTATCACTACCGGGTTTTTCGAATTGCAGCCCAAGGAAGGCCTTGCTTTGGTCAATGGCACAGCAGTTGGCTCCGCTCTTGCTTCCATGACCCTTTTTGAAGCCAACGTTCTTGCACTGCTTTCAGAAATCCTGTCAGCAATCTTTGCTGAAGTCATGCAGGGAAAACCCGAATTTACCGATCACTTGACGCATAGATTAAAACACCATCCGGGACAAATCGAGGCTGCGGCCATAATGGAACACATTTTAGATGGAAGTTCATATGTCAAAGCAGCTAAGAAGTTGCATGAAACAGACCCTCTGCAAAAGCCTAAACGAGATAGGTATGCTCTAAGGACTTCTCCACAATGGCTCGGCCCACAAATCGAAGTCATCCGGCAAGCAACTAAAATGATCGAACGGGAAATAAACTCGGTCAATGACAACCCATTGATTGATGTTTCGAGGAATAAGGCTCTACATGGAGGCAATTTCCAAGGCACCCCAATTGGTGTGTCTATGGACAATACCCGCCTAGCCATTGCTTCTATCGGCAAACTCATGTTTGCTCAATTTTCCGAGCTGGTCAATGACTTTTATAATAACGGGCTGCCTTCAAATCTTTCCGCGAGCCGGGATCCAAGCTTGGATTATGGGTTCAAAGGGGCCGAAATTGCAATGGCATCGTATTGTTCAGAACTTCAATTCTTAGCCAATCCCGTAACGAACCATGTCCAAAGTGCGGAACAACATAACCAAGACGTGAATTCGTTGGGCTTAATTTCAGCTAGAAAGACAGCCGAGGCGGTGGATATATTGAAGCTCATGTCAACCACTTTCTTGGTCGGGTTATGTCAAGCTATTGATTTGAGGCACTTGGAGGAAAACTTAAGGAATACAGTGAAGAGCACAGTGAGTCAAGTAGCCAAGAAAGTACTTGTGATTGGATTCAACGGTGAACTTCACCCGATAAGATTCTGCGAAAAAGACTTACTTACGGTTGTTGATCGGGAATATGTTTTCAATTATGTGGACGATCCCTGTAGTGCTACCTATCCATTGATGCAGAAGCTGAGACAAGTTCTAGTGGAGCATGCTTTGAGCAATGGTGAAAAGGAGACGAATCCGAGCAGTTCGATTTTTCAGAAGATTACCGAGTTCGAGGAAGAATTGAAGGCTGTTTTGCCTAACGAAGTTGAAAATACGAGGGTTGAATATGAGAGCGGAAATCCGACAATTGCGAACCAGATTAATGAATGCAGGTCTTATCCACTGTACAAGTTTGTGAGGGAAACACACGGGACAGAGTTGTTAACGGGCGAGAAAGTGGTGTCGCCCGGTGAAGAATTCGATAAGGTTTTCTCTGCGATTTGTGAAGGGAAGCTCATCGATCCGTTGTTGGAGTGTTTGAGTGATTGGAATGGCGCCCCTCTTCCTATTAACTAA 2142 46.83 MGSIDHNGNGIVNGSFCINESDPLNWGMAAESLKGSHLEEVKRMVEEYRKPMVRLGGETLTIAQVAAIAAHDGSVAVELSESARARVKVSSDWVMESMNKGTDSYAVTTGFGATSHRRTRQGGALQKELTRFLNAGIFGNGKESCNTLPHSATRAAMLVRTNTLLQGYSGIRFEILEAMTKLLNNNVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAIGPNGQPLNPTEAFQQAGITTGFFELQPKEGLALVNGTAVGSALASMTLFEANVLALLSEILSAIFAEVMQGKPEFTDHLTHRLKHHPGQIEAAAIMEHILDGSSYVKAAKKLHETDPLQKPKRDRYALRTSPQWLGPQIEVIRQATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRDPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSTTFLVGLCQAIDLRHLEENLRNTVKSTVSQVAKKVLVIGFNGELHPIRFCEKDLLTVVDREYVFNYVDDPCSATYPLMQKLRQVLVEHALSNGEKETNPSSSIFQKITEFEEELKAVLPNEVENTRVEYESGNPTIANQINECRSYPLYKFVRETHGTELLTGEKVVSPGEEFDKVFSAICEGKLIDPLLECLSDWNGAPLPIN 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56574402 56577242 + Conep01aG0141400.1 Cone1ag1357 432048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1357 713 Gene3D - 13 259 IPR024083 -
Cone1ag1357 713 CDD PAL-HAL 58 523 IPR001106 -
Cone1ag1357 713 NCBIfam phenylalanine ammonia-lyase 22 702 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Cone1ag1357 713 FunFam Phenylalanine ammonia-lyase 13 259 - -
Cone1ag1357 713 SUPERFAMILY L-aspartase-like 22 712 IPR008948 GO:0003824(InterPro)
Cone1ag1357 713 Gene3D - 526 647 IPR023144 -
Cone1ag1357 713 Gene3D Fumarase/aspartase (Central domain) 260 708 - -
Cone1ag1357 713 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 195 211 IPR022313 GO:0016841(InterPro)
Cone1ag1357 713 FunFam Phenylalanine ammonia-lyase 260 540 - -
Cone1ag1357 713 FunFam Phenylalanine ammonia-lyase 526 647 - -
Cone1ag1357 713 PANTHER HISTIDINE AMMONIA-LYASE 20 712 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Cone1ag1357 713 Pfam Aromatic amino acid lyase 60 535 IPR001106 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1309 Cone-Chr11:9665820 Cone1ag1357 Cone-Chr1:56574402 1.83E-103 dispersed
Cone18ag0271 Cone-Chr18:1311305 Cone1ag1357 Cone-Chr1:56574402 0 dispersed
Cone1ag1357 Cone-Chr1:56574402 Cone7ag0757 Cone-Chr7:4676806 6.15E-291 dispersed
Cone1ag1357 Cone-Chr1:56574402 Cone11ag1308 Cone-Chr11:9664209 6.53E-123 wgd
Cone1ag1357 Cone-Chr1:56574402 Cone13ag1260 Cone-Chr13:9546345 0 wgd
Cone1ag1357 Cone-Chr1:56574402 Cone19ag1247 Cone-Chr19:8569861 0 wgd
Cone1ag1357 Cone-Chr1:56574402 Cone5ag0346 Cone-Chr5:1476230 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1357 K10775 - rcu:8273543 1204.89