Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1367 ATGGGTCCTACCGAGAACGATTCGAAACTCGGAGTAGCGAGTCAACTCGTCGAGTCGGTGAAGGAGATCTCCGCCTTTCCCGAGTGCAATTCCATCTGCAAGAAGATGTATTCAAACCTGGTTCGGCGTGTGAAGCTCTTGAGCCCTCTGTTTGAGGAATTGAGGGATGGCGATCAGAACCTTGGAGAAGAAGTAATCGAGGGTTTGGAATTGCTTACAGTTTCTTTGGATTCCGCCAAAAAATTTCTCAGCTCGGTCAACCAATCCAGCAAGCTTTATCAGGCTCTGTGGTTAGAGAAGATTACAGCTGAGTTTCAGTTCATTACAGAGCAAATCGAAATGGCATTGAGCAAGATTCCCTTCGACAAGCTTAATATTTCATACGAGGTTCGAGAACAGGACTTAGCCATAGCACAGGGTGAAAAAGAACCCGGCCCTGCCATATTAATACGGCTTGCAGAAAAGCTTCAACTCAGGACCATCAACGACATAGAGAAGGAGTCACTTGCTTTCCATGATTGGGTTATCTCAAGTGGTGGAGATCCAGGTCACTACTTCGACAAGATGCCTTCCATTCTAAAGAGGAAGCTTAACGGCTATGCACTTATGCAGAACTTACAAACCGACTCCTCTGATATTGAAAAGGTCGTAATTAAGCACAAATCTCCTGTTATCCCGGACGATTTTAGGTGCCCCATTTCTCTTGAATTAATGAAGGATCCAGTGATCGTTTCCACTGGGCAGTATTGCTTTTTACTTCTTATTTCTGTAACCTATGAGCGATCTTGCATTCAAAAATGGCTTGATGCAGGCCACAAGACCTGTCCGAAAACACAGCAAACTCTCTTACATGCAGCTTTAACACCTAACTATGTCTTGAAGAGTCTTGTTGCTCTATGGTGTGAGAGCAATGGCGTAGAGCTGCCCAAGAAGCAAGGCCGGAATAAGAAATTCACTGAATGTGATCGATCTGCCATCAATTTGCTACTAGAAAAACTAGCAAACGGGTCTTTAGAACTGCAAAGAGCATCTGCTGGTGAGCTCCGTTTGCTAGCGAAAAGGAACAGTGATAATCGAGTCTGTATAGCAGAAACCGGAGCAATTCTACTCCTAGTAGAATTATTATCTTCCCAAGATCCTAGAACCCAAGAACATGCAGTAACAGCTCTTCTAAATCTCTATATAAATGACACGAACAAAGGAACTATGGTAAATGCAGGTGCTATACCTGATATAGTAGACGTGCTGAAAAATGGAAGCATGGAGGCAAGAGAAAATGCGGCTGCTACCCTTTTCAGTTTATCCGTTGTAGATGAGAATAAGGTGGTGATTGGAGCAGCTGGGGCAATTCCGGCTCTGATAAGATTGTTTTGTGAGGGGACTCCGAGAGGGAAGAAAGATGCTGCCACAGCTATTTTCAATCTTTCGATTTATCAGGGGAACAAGGCAAGGGCTGTAAAGGCTGGGATTGTGAGCCCGCTTATGGGGTTTTTGAAAGATGCAGGAGGTGGGATGGTGGATTAG 1524 44.55 MGPTENDSKLGVASQLVESVKEISAFPECNSICKKMYSNLVRRVKLLSPLFEELRDGDQNLGEEVIEGLELLTVSLDSAKKFLSSVNQSSKLYQALWLEKITAEFQFITEQIEMALSKIPFDKLNISYEVREQDLAIAQGEKEPGPAILIRLAEKLQLRTINDIEKESLAFHDWVISSGGDPGHYFDKMPSILKRKLNGYALMQNLQTDSSDIEKVVIKHKSPVIPDDFRCPISLELMKDPVIVSTGQYCFLLLISVTYERSCIQKWLDAGHKTCPKTQQTLLHAALTPNYVLKSLVALWCESNGVELPKKQGRNKKFTECDRSAINLLLEKLANGSLELQRASAGELRLLAKRNSDNRVCIAETGAILLLVELLSSQDPRTQEHAVTALLNLYINDTNKGTMVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVVDENKVVIGAAGAIPALIRLFCEGTPRGKKDAATAIFNLSIYQGNKARAVKAGIVSPLMGFLKDAGGGMVD 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56614275 56616127 + Conep01aG0142500.1 Cone1ag1367 432058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1367 507 SUPERFAMILY ARM repeat 320 500 IPR016024 -
Cone1ag1367 507 ProSiteProfiles U-box domain profile. 224 307 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone1ag1367 507 Pfam Armadillo/beta-catenin-like repeat 355 393 IPR000225 GO:0005515(InterPro)
Cone1ag1367 507 Pfam Armadillo/beta-catenin-like repeat 438 476 IPR000225 GO:0005515(InterPro)
Cone1ag1367 507 Pfam U-box domain 225 304 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone1ag1367 507 FunFam RING-type E3 ubiquitin transferase 9 122 - -
Cone1ag1367 507 CDD MLKL_NTD 10 121 - -
Cone1ag1367 507 SMART Ubox_2 228 300 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone1ag1367 507 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 222 306 IPR013083 -
Cone1ag1367 507 SMART arm_5 355 395 IPR000225 GO:0005515(InterPro)
Cone1ag1367 507 SMART arm_5 396 436 IPR000225 GO:0005515(InterPro)
Cone1ag1367 507 SMART arm_5 437 477 IPR000225 GO:0005515(InterPro)
Cone1ag1367 507 Gene3D - 8 122 IPR036537 GO:0007166(InterPro)
Cone1ag1367 507 CDD RING-Ubox_PUB 226 287 IPR045210 -
Cone1ag1367 507 SUPERFAMILY RING/U-box 225 309 - -
Cone1ag1367 507 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 366 408 IPR000225 GO:0005515(InterPro)
Cone1ag1367 507 PANTHER U BOX DOMAIN-CONTAINING 34 507 - -
Cone1ag1367 507 Gene3D - 307 504 IPR011989 -
Cone1ag1367 507 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 407 449 IPR000225 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1367 Cone-Chr1:56614275 Cone5ag1640 Cone-Chr5:11573290 4.79E-45 dispersed
Cone1ag1367 Cone-Chr1:56614275 Cone5ag0357 Cone-Chr5:1515471 2.79E-232 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1367 K27628 - cit:102621804 693.73