Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1378 ATGGCAAAAGCAAATACTCCCTCCTCCGTAGTTATCATTCCTTCAAGATTGCTTCTTACAACAACCTGCATTTTCTTAATATGCACAATAGAAGCATTAATCTTTCCCTTCTTCAGAGCTAACTCCTTCAACCTCACCCTCTCTCATCAGCACCAAAATCCTGATGCTGTTGTTCAAGAAGTTCAAAGGAGAGTCAACGAGTCTCTCACCAGAAGACGAACACTATCCGTCCAAACAAAGGACCAAACTTTTTCCTGTATCTCCGGAAACCCAATCGACGATTGCTGGCGCTGCGACCCAAACTGGCAAGCAAACAGTCAAAAACTAGCTGACTGTGGCATAGGATTTGGCCAAGACGCCATGGGAGGCAGAGCAGGTCAATTTTACATAGTCACAGACTCCTCTGACTCAGACCCAGCAAACCCAAAACCAGGCACCCTCCGACACGCCGTAATCCAATTCGAACCCCTCTGGATAATCTTCTCATCAGACATGTCGATCAAACTCAAACATGAGCTCATTTTCAATAGCTACAAAACAATCGACGGACGTGGATCAAACGTTGAAATCACCGGCGGAGGTTGCATAACCCTGCAGTACGTGTCAAACATAATAATCCACAACATCCACGTCCACCACTGTAAGCCCACGGGCAACTCCATCATACGCTCCACCCCAATACACGTAGGATTCCGTGGCAGATCGGACGGCGATGGTATCTCCATCTTCAGCTCCCGCAAAATCTGGATCGACCATTGCTCACTGTCCTACTGTACCGACGGTTTGATTGACGCCATAATGGGTTCCACCGGAATAACCATTTCAAACAACTATTTTTCGCATCACGATAAGGTCATGTTATTGGGCCATACTGATTCGTATGTAGCAGACTCAGGCATGCAGGTAACCATAGCTTTTAACCACTTTGGTGAGGCGCTGGTGCAGCGTATGCCGCGGTGTAGACGCGGGTATATACACGTGGTGAATAACGATTTCACGGCATGGGATATGTATGCTATCGGCGGAAGTGCTAACCCGACGATTAATAGTCAGGGGAATAGGTACACTGCGCTGGCGGATCCTAACGCGAAGGAGGTGACAAAGAGGGTGGAGACGGAGGAGAGAGAGTGGACGGAGTGGAATTGGAGGACGGAGGGGGACATTATGGTCAATGGGGCTTACTTTGTTCCTTCTGGGTTTGGGCTGAGCTCTCGGTACGCAAAGGCCACTAGTGTGGAGCCCAAGTCCGCTGCTCTTATCGATCAGCTCACAATGACTGCTGGGGTTCTTGGTGGGCCCAGGGATGCTAGTCAGAGCATTGCATATCCAGGATTTAGTAGTGGCGGCAGAGGCAGTAACGGTGGTCCCTCGAGCACCCCTGCCACCACCAACAATGCTAATCCAGGAACGGATACTGGCAGTGGAGATGGAGACTACTGGGGAATGATATTCGGCAGTGGATCCAATAGCGGAACATCATGGCCAGCAGGGTTCTGTATTGACCCAGTCCTGTTGTGTCTGATATCTATTCTAATTTTGTATACAACCACCAATTTGTGTGATATGTTGTCATAA 1575 48.89 MAKANTPSSVVIIPSRLLLTTTCIFLICTIEALIFPFFRANSFNLTLSHQHQNPDAVVQEVQRRVNESLTRRRTLSVQTKDQTFSCISGNPIDDCWRCDPNWQANSQKLADCGIGFGQDAMGGRAGQFYIVTDSSDSDPANPKPGTLRHAVIQFEPLWIIFSSDMSIKLKHELIFNSYKTIDGRGSNVEITGGGCITLQYVSNIIIHNIHVHHCKPTGNSIIRSTPIHVGFRGRSDGDGISIFSSRKIWIDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHDKVMLLGHTDSYVADSGMQVTIAFNHFGEALVQRMPRCRRGYIHVVNNDFTAWDMYAIGGSANPTINSQGNRYTALADPNAKEVTKRVETEEREWTEWNWRTEGDIMVNGAYFVPSGFGLSSRYAKATSVEPKSAALIDQLTMTAGVLGGPRDASQSIAYPGFSSGGRGSNGGPSSTPATTNNANPGTDTGSGDGDYWGMIFGSGSNSGTSWPAGFCIDPVLLCLISILILYTTTNLCDMLS 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56664382 56666738 - Conep01aG0143600.1 Cone1ag1378 432069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1378 524 Gene3D - 89 431 IPR012334 -
Cone1ag1378 524 MobiDBLite consensus disorder prediction 441 472 - -
Cone1ag1378 524 SUPERFAMILY Pectin lyase-like 79 406 IPR011050 -
Cone1ag1378 524 PANTHER PECTATE LYASE 18-RELATED 34 431 IPR045032 GO:0030570(InterPro)
Cone1ag1378 524 Pfam Pectate lyase 170 353 IPR002022 -
Cone1ag1378 524 FunFam Pectate lyase 89 431 - -
Cone1ag1378 524 PRINTS Pollen allergen Amb family signature 409 432 IPR018082 -
Cone1ag1378 524 PRINTS Pollen allergen Amb family signature 136 161 IPR018082 -
Cone1ag1378 524 PRINTS Pollen allergen Amb family signature 236 257 IPR018082 -
Cone1ag1378 524 PRINTS Pollen allergen Amb family signature 316 335 IPR018082 -
Cone1ag1378 524 PRINTS Pollen allergen Amb family signature 380 404 IPR018082 -
Cone1ag1378 524 PRINTS Pollen allergen Amb family signature 338 357 IPR018082 -
Cone1ag1378 524 PRINTS Pollen allergen Amb family signature 172 188 IPR018082 -
Cone1ag1378 524 PRINTS Pollen allergen Amb family signature 112 129 IPR018082 -
Cone1ag1378 524 SMART amb_all 164 361 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1378 Cone-Chr1:56664382 Cone3ag0244 Cone-Chr3:1304395 1.01E-216 dispersed
Cone1ag0495 Cone-Chr1:4834236 Cone1ag1378 Cone-Chr1:56664382 3.93E-49 wgd
Cone1ag1378 Cone-Chr1:56664382 Cone11ag1037 Cone-Chr11:8205776 1.00E-246 wgd
Cone1ag1378 Cone-Chr1:56664382 Cone18ag0538 Cone-Chr18:2654646 6.59E-241 wgd
Cone1ag1378 Cone-Chr1:56664382 Cone5ag0370 Cone-Chr5:1575229 0 wgd
Cone1ag1378 Cone-Chr1:56664382 Cone5ag1260 Cone-Chr5:6004920 5.58E-49 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1378 K01728 - vvi:100246124 686.026