Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1393 ATGAATTGTCTTCAGAACTTTCTGAGATCCTCTCCATCACCTCTGCAAAGCTTCAAACACCATGAAAGAAAGCCGAGCTTCTACCCCTGCACACTGGGAGTAATGACTTCTGATCTGCATCGCCGCAAATACGTGAAGGCAATATCTGGTTCAACCTCTAGTGCTGAGATGAGTGGAACGGAAGCAGAGGAGGAGAAATCTGAGCTATACAGCAACAACATGACAGAAGCAATGGGCGCTGTATTGACTTATAGGCATGAGCTTGGAATAAACTACAATTTCATTCGTCCAGATCTTATAGTGGGGTCTTGCTTACAGACTCCAGAAGATGTCGACAAGCTTCGTCTAATAGGAGTCAAAACAATCTTTTGCCTGCAACAGAATTCAGATTTGGAATATTTTGGCGTTGATATCGGTGCCATAAGAGAATATGCAAGTACACACGATGATCTTGAACACTTGCGTGCTGAAATAAGGGATTTTGATTCGTATGATTTGAGGCTAAGGTTACCTGCTGTGTTAAGCAAATTATACAAGGCTGTAAACCGAACTGGAGGGGTTACTTATGTACATTGCACTGCTGGACTTGGGAGAGCACCAGCTGTTGCGCTGGCATATATGTTCTGGGTTCAGGGTTACAAACTTAGCAACGCTCGTCAACTACTGCTGAGCAAACGGCCATGCTTCCCGAAGCTGGATGCAATAAAAAGTGCAACTGCTGATATCCTTACGGGGTCCAGGAAGAAGCATGTCACTTTGAAATGGCCGAATAGCAATTGCTTTACTGTCGAGATTTCTGGACTTGACATCGGATGGGGTCAGAGAATACCTTTACAATTCAAGAAAGAACAAGGTTCCTGGATACTTGAGAGGGAATTGCCGGAAGGACGTTATGAATACAAGTACATCATAAATGGTGAATGGACAATCAACACGTCCGAGCCTGTCACCTATCCTAACATGGATGGCCATGTCAATAATTTTGTTCAAGTTATTGATGATGATACAAATAGTGAAAGGGCAAACCTGCGAAAGAAGCTGGGCGGAGATGATCCGGAGCTTACGACCGCGGAAAAAGGGAAAATAAGACAATTTCTTGAAGATTATCCAGAGGATGGGTGA 1122 43.85 MNCLQNFLRSSPSPLQSFKHHERKPSFYPCTLGVMTSDLHRRKYVKAISGSTSSAEMSGTEAEEEKSELYSNNMTEAMGAVLTYRHELGINYNFIRPDLIVGSCLQTPEDVDKLRLIGVKTIFCLQQNSDLEYFGVDIGAIREYASTHDDLEHLRAEIRDFDSYDLRLRLPAVLSKLYKAVNRTGGVTYVHCTAGLGRAPAVALAYMFWVQGYKLSNARQLLLSKRPCFPKLDAIKSATADILTGSRKKHVTLKWPNSNCFTVEISGLDIGWGQRIPLQFKKEQGSWILERELPEGRYEYKYIINGEWTINTSEPVTYPNMDGHVNNFVQVIDDDTNSERANLRKKLGGDDPELTTAEKGKIRQFLEDYPEDG 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56720858 56723917 - Conep01aG0145100.1 Cone1ag1393 432084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1393 373 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 168 227 IPR000387 GO:0016311(InterPro)
Cone1ag1393 373 Gene3D Protein tyrosine phosphatase superfamily 84 365 IPR029021 -
Cone1ag1393 373 SMART dsp_5 91 241 IPR020422 GO:0006470(InterPro)
Cone1ag1393 373 SUPERFAMILY E set domains 248 331 IPR014756 -
Cone1ag1393 373 CDD E_set_AMPKbeta_like_N 251 331 - -
Cone1ag1393 373 Pfam Glycogen recognition site of AMP-activated protein kinase 251 335 IPR032640 -
Cone1ag1393 373 FunFam Phosphoglucan phosphatase DSP4, chloroplastic 246 336 - -
Cone1ag1393 373 Gene3D Immunoglobulins 246 337 IPR013783 -
Cone1ag1393 373 MobiDBLite consensus disorder prediction 344 373 - -
Cone1ag1393 373 CDD DSP_laforin-like 90 237 IPR045204 GO:0019203(InterPro)
Cone1ag1393 373 ProSiteProfiles Dual specificity protein phosphatase domain profile. 91 248 IPR020422 GO:0006470(InterPro)
Cone1ag1393 373 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 88 233 IPR029021 -
Cone1ag1393 373 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 3 372 IPR052832 GO:0005983(PANTHER)|GO:0009507(PANTHER)|GO:0019203(PANTHER)|GO:0046838(PANTHER)|GO:2001070(PANTHER)
Cone1ag1393 373 FunFam Phosphoglucan phosphatase DSP4, chloroplastic 84 264 - -
Cone1ag1393 373 Pfam Dual specificity phosphatase, catalytic domain 145 229 IPR000340 GO:0016311(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1393 Cone-Chr1:56720858 Cone5ag0149 Cone-Chr5:631863 3.47E-41 dispersed
Cone1ag1393 Cone-Chr1:56720858 Cone5ag0384 Cone-Chr5:1640964 4.25E-249 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1393 - - - 0.0