Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1406 ATGGAGCAGTATGAAAAAGTTGAGAAGATTGGCGAGGGAACATATGGTGTTGTTTACAAGGCTCGTGATCGCGTCACTAATGAGACTATTGCTTTGAAGAAGATTCGCTTGGAGCAGGAAGATGAAGGAGTGCCAAGCACCGCAATAAGAGAGATTTCTCTTTTGAAGGAAATGCAACATGGCAACATTGTTAGGTTACAGGATGTAGTGCATAGTGAGAAGCGCTTGTATCTTGTATTTGAATACCTGGACTTGGATCTCAAGAAACATATGGATTCCTCTCCGGAATTTGCAAATGACCTACGACAAATAAAAATGTTCCTGTACCAAATTCTTCGTGGCATTGCTTACTGCCATTCCCATAGAGTTCTTCATCGAGATCTGAAACCCCAGAATTTGCTGATAGATCGCCGTACCAATGCACTAAAGCTTGCAGACTTCGGACTGGCAAGAGCGTTTGGTATTCCTGTTAGGACATTTACACATGAGGTGGTGACCCTTTGGTATAGAGCACCAGAAATATTGCTTGGATCCCGTCATTACTCCACTCCTGTTGATGTGTGGTCAGTTGGTTGTATATTTGCTGAGATGATAAACCAACGGCCATTATTCCCCGGGGACTCTGAGATTGATGAATTATTCAAGATATTCAGGGTTTTGGGTACTCCAAATGAGGATACATGGCCGGGAGTGACTTCTTTGCCTGATTTTAAGTCCGCTTTTCCCAAGTGGCCTGCTAAGGACCTTGCTTCTATTGTTCCAAGTCTTGAGTCAACTGGTGTTGATCTTCTTTGTAAAATGCTCTGCTTGGATCCCAGCAAGAGAATTACTGCAAGAAACGCCCTTGAGCACGAGTATTTCAAAGATATTGGATTTGTACCGTGA 885 43.16 MEQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSSPEFANDLRQIKMFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMINQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPAKDLASIVPSLESTGVDLLCKMLCLDPSKRITARNALEHEYFKDIGFVP 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56782156 56785360 + Conep01aG0146400.1 Cone1ag1406 432097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1406 294 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524(InterPro)
Cone1ag1406 294 Gene3D Phosphorylase Kinase; domain 1 1 84 - -
Cone1ag1406 294 SMART serkin_6 4 287 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag1406 294 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone1ag1406 294 FunFam Cell division control protein 2 homolog 86 292 - -
Cone1ag1406 294 Pfam Protein kinase domain 4 287 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag1406 294 PANTHER CELL DIVISION PROTEIN KINASE 3 287 IPR050108 GO:0000082(PANTHER)|GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0004693(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)|GO:0010033(PANTHER)|GO:0010389(PANTHER)|GO:0010468(PANTHER)|GO:0030332(PANTHER)|GO:0051445(PANTHER)
Cone1ag1406 294 ProSiteProfiles Protein kinase domain profile. 4 287 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag1406 294 Gene3D Transferase(Phosphotransferase) domain 1 86 292 - -
Cone1ag1406 294 FunFam Cell division control protein 2 1 84 - -
Cone1ag1406 294 SUPERFAMILY Protein kinase-like (PK-like) 1 290 IPR011009 -
Cone1ag1406 294 CDD STKc_CDK1_CdkB_like 4 287 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0526 Cone-Chr12:3636713 Cone1ag1406 Cone-Chr1:56782156 3.84E-65 dispersed
Cone13ag0210 Cone-Chr13:1354774 Cone1ag1406 Cone-Chr1:56782156 5.33E-84 dispersed
Cone1ag1406 Cone-Chr1:56782156 Cone7ag1950 Cone-Chr7:12440276 1.83E-114 dispersed
Cone9ag0801 Cone-Chr9:3846444 Cone1ag1406 Cone-Chr1:56782156 1.32E-57 dispersed
Cone15ag0975 Cone-Chr15:7772701 Cone1ag1406 Cone-Chr1:56782156 9.38E-74 transposed
Cone19ag0319 Cone-Chr19:2517131 Cone1ag1406 Cone-Chr1:56782156 3.26E-56 transposed
Cone1ag1406 Cone-Chr1:56782156 Cone5ag0397 Cone-Chr5:1698040 6.33E-218 wgd
Cone1ag1406 Cone-Chr1:56782156 Cone5ag1291 Cone-Chr5:7206336 3.65E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82509 PF00076 RRM_1 1.40E-17 CL0221 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1406 K02206 - rcu:8267743 575.859