Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone1ag1406 | ATGGAGCAGTATGAAAAAGTTGAGAAGATTGGCGAGGGAACATATGGTGTTGTTTACAAGGCTCGTGATCGCGTCACTAATGAGACTATTGCTTTGAAGAAGATTCGCTTGGAGCAGGAAGATGAAGGAGTGCCAAGCACCGCAATAAGAGAGATTTCTCTTTTGAAGGAAATGCAACATGGCAACATTGTTAGGTTACAGGATGTAGTGCATAGTGAGAAGCGCTTGTATCTTGTATTTGAATACCTGGACTTGGATCTCAAGAAACATATGGATTCCTCTCCGGAATTTGCAAATGACCTACGACAAATAAAAATGTTCCTGTACCAAATTCTTCGTGGCATTGCTTACTGCCATTCCCATAGAGTTCTTCATCGAGATCTGAAACCCCAGAATTTGCTGATAGATCGCCGTACCAATGCACTAAAGCTTGCAGACTTCGGACTGGCAAGAGCGTTTGGTATTCCTGTTAGGACATTTACACATGAGGTGGTGACCCTTTGGTATAGAGCACCAGAAATATTGCTTGGATCCCGTCATTACTCCACTCCTGTTGATGTGTGGTCAGTTGGTTGTATATTTGCTGAGATGATAAACCAACGGCCATTATTCCCCGGGGACTCTGAGATTGATGAATTATTCAAGATATTCAGGGTTTTGGGTACTCCAAATGAGGATACATGGCCGGGAGTGACTTCTTTGCCTGATTTTAAGTCCGCTTTTCCCAAGTGGCCTGCTAAGGACCTTGCTTCTATTGTTCCAAGTCTTGAGTCAACTGGTGTTGATCTTCTTTGTAAAATGCTCTGCTTGGATCCCAGCAAGAGAATTACTGCAAGAAACGCCCTTGAGCACGAGTATTTCAAAGATATTGGATTTGTACCGTGA | 885 | 43.16 | MEQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSSPEFANDLRQIKMFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMINQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPAKDLASIVPSLESTGVDLLCKMLCLDPSKRITARNALEHEYFKDIGFVP | 294 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 56782156 | 56785360 | + | Conep01aG0146400.1 | Cone1ag1406 | 432097 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone1ag1406 | 294 | ProSitePatterns | Protein kinases ATP-binding region signature. | 10 | 33 | IPR017441 | GO:0005524(InterPro) | |
Cone1ag1406 | 294 | Gene3D | Phosphorylase Kinase; domain 1 | 1 | 84 | - | - | |
Cone1ag1406 | 294 | SMART | serkin_6 | 4 | 287 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cone1ag1406 | 294 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 123 | 135 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cone1ag1406 | 294 | FunFam | Cell division control protein 2 homolog | 86 | 292 | - | - | |
Cone1ag1406 | 294 | Pfam | Protein kinase domain | 4 | 287 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cone1ag1406 | 294 | PANTHER | CELL DIVISION PROTEIN KINASE | 3 | 287 | IPR050108 | GO:0000082(PANTHER)|GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0004693(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)|GO:0010033(PANTHER)|GO:0010389(PANTHER)|GO:0010468(PANTHER)|GO:0030332(PANTHER)|GO:0051445(PANTHER) | |
Cone1ag1406 | 294 | ProSiteProfiles | Protein kinase domain profile. | 4 | 287 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cone1ag1406 | 294 | Gene3D | Transferase(Phosphotransferase) domain 1 | 86 | 292 | - | - | |
Cone1ag1406 | 294 | FunFam | Cell division control protein 2 | 1 | 84 | - | - | |
Cone1ag1406 | 294 | SUPERFAMILY | Protein kinase-like (PK-like) | 1 | 290 | IPR011009 | - | |
Cone1ag1406 | 294 | CDD | STKc_CDK1_CdkB_like | 4 | 287 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone12ag0526 | Cone-Chr12:3636713 | Cone1ag1406 | Cone-Chr1:56782156 | 3.84E-65 | dispersed | |
Cone13ag0210 | Cone-Chr13:1354774 | Cone1ag1406 | Cone-Chr1:56782156 | 5.33E-84 | dispersed | |
Cone1ag1406 | Cone-Chr1:56782156 | Cone7ag1950 | Cone-Chr7:12440276 | 1.83E-114 | dispersed | |
Cone9ag0801 | Cone-Chr9:3846444 | Cone1ag1406 | Cone-Chr1:56782156 | 1.32E-57 | dispersed | |
Cone15ag0975 | Cone-Chr15:7772701 | Cone1ag1406 | Cone-Chr1:56782156 | 9.38E-74 | transposed | |
Cone19ag0319 | Cone-Chr19:2517131 | Cone1ag1406 | Cone-Chr1:56782156 | 3.26E-56 | transposed | |
Cone1ag1406 | Cone-Chr1:56782156 | Cone5ag0397 | Cone-Chr5:1698040 | 6.33E-218 | wgd | |
Cone1ag1406 | Cone-Chr1:56782156 | Cone5ag1291 | Cone-Chr5:7206336 | 3.65E-37 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
82509 | PF00076 | RRM_1 | 1.40E-17 | CL0221 | Cone | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone1ag1406 | K02206 | - | rcu:8267743 | 575.859 |