Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1430 ATGGAATCGGAAACCCCGAAATGGGCTTCGACGCCTTGCATTATGGGTATCGATGAAGCTGGTCGAGGCCCTGTTTTAGGCCCAATGGTGTATGGATGCTTATACTGTGCTCGTTCCTACATGGAAACTCTTTCCTCTTTAAACTTTGCCGATTCCAAGACATTGAAAGAGGAGAAGAGGGAAGAACTGTTTGAAAAGTTAAAGGCTGATGGATCGATCGGATGGGGTGTTGATGTCATAGATCCAAAGGAGCTCTCAGCCAAAATGCTTCAGAAAAATAAGATAAACCTGAATGAAATATCACATGACTCTGCAATGGGCCTCGTTAATAGGGTCCTCAACATGGGATTTCTTCTAACCGAGGTTTATGTAGATACTGTTGGAGATACTGAAAAGTACAGAATAAAACTATCCGAAAGGTTTCCCACTGTTAAATTTGTTGTCGCTAAGAAGGCTGATAGTTTATATCCTGTTGTGAGTGGTGCAAGTATAGTTGCAAAGGTCACAAGAGACCGAGCTGTACGGGAATGGGTGCTTGATGAAACAGCTGAAAACATGCATAGGAAGTTCGGGTCTGGATATCCAGGAGATCCTGAAACTAAGGCCTGGTTAGAAGATCATAAACACTCTGTATTCGCATTTCCAACATTGGTGCGCTTTAGTTGGGGTACTTGTACTCCATTCTTCAAAGACATGGTTGAAGTCTTATGGGAATCTGATAAGATGAATGAAGGTGAGTCGGCAAGTAGTGGTTATGGTAAGAGGCAATTGAAGTTAAGCAATGTGGGCTTCACCTCATCCAAGAGAAAGAGTGAAGAAATTGAATCAAGTGCGAAAGGGCGCTGCAAGTTTTTCCAGACTCGTAAGCTTGAGCAACTCACTCAGTTTTGA 891 42.87 MESETPKWASTPCIMGIDEAGRGPVLGPMVYGCLYCARSYMETLSSLNFADSKTLKEEKREELFEKLKADGSIGWGVDVIDPKELSAKMLQKNKINLNEISHDSAMGLVNRVLNMGFLLTEVYVDTVGDTEKYRIKLSERFPTVKFVVAKKADSLYPVVSGASIVAKVTRDRAVREWVLDETAENMHRKFGSGYPGDPETKAWLEDHKHSVFAFPTLVRFSWGTCTPFFKDMVEVLWESDKMNEGESASSGYGKRQLKLSNVGFTSSKRKSEEIESSAKGRCKFFQTRKLEQLTQF 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56879998 56882032 + Conep01aG0148800.1 Cone1ag1430 432121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1430 296 Gene3D Ribonuclease hii. Domain 2 185 232 IPR023160 GO:0004523(InterPro)
Cone1ag1430 296 CDD RNase_HII_eukaryota_like 15 234 - -
Cone1ag1430 296 PANTHER RIBONUCLEASE H2 SUBUNIT A 2 269 IPR001352 GO:0003723(InterPro)|GO:0004523(InterPro)|GO:0004523(PANTHER)|GO:0006298(PANTHER)|GO:0032299(PANTHER)|GO:0043137(PANTHER)
Cone1ag1430 296 NCBIfam ribonuclease HII 14 226 IPR004649 GO:0004523(InterPro)|GO:0016070(InterPro)
Cone1ag1430 296 SUPERFAMILY Ribonuclease H-like 13 230 IPR012337 -
Cone1ag1430 296 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 33 - -
Cone1ag1430 296 FunFam Ribonuclease 186 233 - -
Cone1ag1430 296 Pfam Ribonuclease HII 15 225 IPR024567 GO:0004523(InterPro)
Cone1ag1430 296 ProSiteProfiles Ribonuclease (RNase) H type-2 domain profile. 12 234 IPR024567 GO:0004523(InterPro)
Cone1ag1430 296 Gene3D - 1 184 IPR036397 GO:0003676(InterPro)
Cone1ag1430 296 FunFam Ribonuclease 1 184 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0424 Cone-Chr5:1793484 Cone1ag1430 Cone-Chr1:56879998 6.99E-54 transposed
Cone1ag1430 Cone-Chr1:56879998 Cone5ag0423 Cone-Chr5:1792770 9.29E-19 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1430 K10743 - vvi:100260143 494.197