Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone1ag1430 | ATGGAATCGGAAACCCCGAAATGGGCTTCGACGCCTTGCATTATGGGTATCGATGAAGCTGGTCGAGGCCCTGTTTTAGGCCCAATGGTGTATGGATGCTTATACTGTGCTCGTTCCTACATGGAAACTCTTTCCTCTTTAAACTTTGCCGATTCCAAGACATTGAAAGAGGAGAAGAGGGAAGAACTGTTTGAAAAGTTAAAGGCTGATGGATCGATCGGATGGGGTGTTGATGTCATAGATCCAAAGGAGCTCTCAGCCAAAATGCTTCAGAAAAATAAGATAAACCTGAATGAAATATCACATGACTCTGCAATGGGCCTCGTTAATAGGGTCCTCAACATGGGATTTCTTCTAACCGAGGTTTATGTAGATACTGTTGGAGATACTGAAAAGTACAGAATAAAACTATCCGAAAGGTTTCCCACTGTTAAATTTGTTGTCGCTAAGAAGGCTGATAGTTTATATCCTGTTGTGAGTGGTGCAAGTATAGTTGCAAAGGTCACAAGAGACCGAGCTGTACGGGAATGGGTGCTTGATGAAACAGCTGAAAACATGCATAGGAAGTTCGGGTCTGGATATCCAGGAGATCCTGAAACTAAGGCCTGGTTAGAAGATCATAAACACTCTGTATTCGCATTTCCAACATTGGTGCGCTTTAGTTGGGGTACTTGTACTCCATTCTTCAAAGACATGGTTGAAGTCTTATGGGAATCTGATAAGATGAATGAAGGTGAGTCGGCAAGTAGTGGTTATGGTAAGAGGCAATTGAAGTTAAGCAATGTGGGCTTCACCTCATCCAAGAGAAAGAGTGAAGAAATTGAATCAAGTGCGAAAGGGCGCTGCAAGTTTTTCCAGACTCGTAAGCTTGAGCAACTCACTCAGTTTTGA | 891 | 42.87 | MESETPKWASTPCIMGIDEAGRGPVLGPMVYGCLYCARSYMETLSSLNFADSKTLKEEKREELFEKLKADGSIGWGVDVIDPKELSAKMLQKNKINLNEISHDSAMGLVNRVLNMGFLLTEVYVDTVGDTEKYRIKLSERFPTVKFVVAKKADSLYPVVSGASIVAKVTRDRAVREWVLDETAENMHRKFGSGYPGDPETKAWLEDHKHSVFAFPTLVRFSWGTCTPFFKDMVEVLWESDKMNEGESASSGYGKRQLKLSNVGFTSSKRKSEEIESSAKGRCKFFQTRKLEQLTQF | 296 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 56879998 | 56882032 | + | Conep01aG0148800.1 | Cone1ag1430 | 432121 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone1ag1430 | 296 | Gene3D | Ribonuclease hii. Domain 2 | 185 | 232 | IPR023160 | GO:0004523(InterPro) | |
Cone1ag1430 | 296 | CDD | RNase_HII_eukaryota_like | 15 | 234 | - | - | |
Cone1ag1430 | 296 | PANTHER | RIBONUCLEASE H2 SUBUNIT A | 2 | 269 | IPR001352 | GO:0003723(InterPro)|GO:0004523(InterPro)|GO:0004523(PANTHER)|GO:0006298(PANTHER)|GO:0032299(PANTHER)|GO:0043137(PANTHER) | |
Cone1ag1430 | 296 | NCBIfam | ribonuclease HII | 14 | 226 | IPR004649 | GO:0004523(InterPro)|GO:0016070(InterPro) | |
Cone1ag1430 | 296 | SUPERFAMILY | Ribonuclease H-like | 13 | 230 | IPR012337 | - | |
Cone1ag1430 | 296 | ProSiteProfiles | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 33 | - | - | |
Cone1ag1430 | 296 | FunFam | Ribonuclease | 186 | 233 | - | - | |
Cone1ag1430 | 296 | Pfam | Ribonuclease HII | 15 | 225 | IPR024567 | GO:0004523(InterPro) | |
Cone1ag1430 | 296 | ProSiteProfiles | Ribonuclease (RNase) H type-2 domain profile. | 12 | 234 | IPR024567 | GO:0004523(InterPro) | |
Cone1ag1430 | 296 | Gene3D | - | 1 | 184 | IPR036397 | GO:0003676(InterPro) | |
Cone1ag1430 | 296 | FunFam | Ribonuclease | 1 | 184 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone5ag0424 | Cone-Chr5:1793484 | Cone1ag1430 | Cone-Chr1:56879998 | 6.99E-54 | transposed | |
Cone1ag1430 | Cone-Chr1:56879998 | Cone5ag0423 | Cone-Chr5:1792770 | 9.29E-19 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone1ag1430 | K10743 | - | vvi:100260143 | 494.197 |