Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1460 ATGGAAAGAGGAGGGTCATCAGCTTACAGTTCTGTTCCAAATAATTCAGCTTGTATTGACAAGAACAGAGTTCTAGACATAAAACCACTTCGTCAATTAGCACCTATTTTCCCAAACACGCCTCATCAAGGCCATTCTCAAGCTTCCCCCTTGATGAGTTTATCTCCCTCCGGCCCTTTCCCGCCTGGATTTTCCACCTTTTACCCATTTAGCACTCCCCAATGGCCCGATGGTATGCCCGACCTCAACCACCAGGCTCCTTGCTACCCAACACCTCTCCGGGCTTTTAAAAGCACACAGGCCCATGAATCCAATGGAGACTATGAAGAATCTTACGACAACAGCCCCAAACGGCTATGTGGTTCTAAATCTCGTGGCTCTAATTCCTCTCAAAAGCTGAAGAAGAAACAGAAGAACAATCTTGACCCAAACCTTTCATTGTCTATTGTCGGTTGTAATGCACCTGGTATTAGTTCTGTACCTGGTATAACTCAATCTGAAAGAGATAATGGAGACAGGGATGTTGTTACTTGTGTTCGTATGACATATGATGCACTTCGTAGAAGGCTAAGTCAGCTTGAAGAGGTCAAGGAGTTGAGAAATGGGGTTAACAAGCGATCAGATTTAAGAGCTGGGAATATTTTGATGAGTACAGGGTTTAGAACTAACATGAAGAGGAGGATTGGGGCCATTCCTGGAGTTGAAATTGGAGACATATTTTTCTTCCGTATAGAATTGTGCGTGGTGGGGTTACATGCCCCTTCCATGGCTGGAATTGATTACATGAATTTCAAGGACGGTTTTGAGGATGAGCCAGTGGCTTTAAGCATTGTTTCGTCCGGAGGATATGAAGATGATGTTGAGGATTGTGATGTTTTGGTTTATACAGGGCATGGTGGGAATGCAAATTATAAAGACAAGCCAACTGCTGATCAGAAACTTGTGAGGGGTAATCTTGCTCTTGAGAGGAGCTTGCGTCGGGCCAACGAAGTACGCGTTATTCGAGGTATGAAAGATGTTATGGGTCCTGCAGCTAAAGTTTATGTCTATGATGGGTTGTATAAGGTCCAAGAGACTTGGATAGAGAAGGGAAAATCAGGTTGCAATATTTTCAAGTACAAATTGGTGAGGAATCCGGGCCAGCCAGGTGCCTTTTCAGTTTGGAAATCAATCCAGAAGTGGAAGGAAAGTTTGTCTTCAAGGGTTGCATTAGTCCTTCCAGATCTTACTTCAGGGGCAGAAACTATTCCCGTTTCACTTGTAAATGATATTGACGGTGAAAAGGGACCCACTTCTTTCACTTATTTTCCTACTCTTAAATACTCCAAAGCATTTTTTTTATCACAACCTGCTTTTGGCTGTAATTGTCGTAATGCATGCAGCCCAGGAGACCCCAATTGTTCCTGCATTCAAAAAAATGATGGTGAAATTCCATATACTATGACTGGAAGTTTAGTGAGCCGTAAGCCGTTGATCTATGAATGTGGGCCCTCATGCCCCTGCATTCCGAACTGTAAAAACCGAGTATCTCAAATGGGTATAAAAGTTCGGCTTGAAGTGTTTAAAACAAAGGATAAGGGATGGGGACTGAGGTCATGGGATCCTATTAGGGCCGGAACGTTTATCTGTGAATATGCAGGTGAAGTTATAGATAAAGTCAGAAAGGGTGATGAAGCGGGATGCGATGAGTATATCTTTGATACGACCCGTGTTTATGAATCATTCAAGTGGAATTATGAGCCAGAGTTTTTGGAAGAAGAGAGTACTGAGGATGCTATTGAGGAGTACAACATCCCTTCTCCTTTAGTCATAAGTTCCAAGCACATTGGAAATGTGGCTCGGTTTATGAATCATAGTTGCTCGCCCAATCTTTTCTGGCAGCCAGTTTTATATGAGCATAACGGCCAATCATTTCTCCATATCGCCTTTTATGCAATTAGACACATCCCTCCATTAACAGAGTTGACATTTGATTATGGGATTACCCGCTCTGATGGGGCTGAGGGTGAGACACGCAGGAGAAAGAAATGCTTCTGTGGATCATCAAAATGTCGGGGCTTTTTTTGTTAA 2070 43.09 MERGGSSAYSSVPNNSACIDKNRVLDIKPLRQLAPIFPNTPHQGHSQASPLMSLSPSGPFPPGFSTFYPFSTPQWPDGMPDLNHQAPCYPTPLRAFKSTQAHESNGDYEESYDNSPKRLCGSKSRGSNSSQKLKKKQKNNLDPNLSLSIVGCNAPGISSVPGITQSERDNGDRDVVTCVRMTYDALRRRLSQLEEVKELRNGVNKRSDLRAGNILMSTGFRTNMKRRIGAIPGVEIGDIFFFRIELCVVGLHAPSMAGIDYMNFKDGFEDEPVALSIVSSGGYEDDVEDCDVLVYTGHGGNANYKDKPTADQKLVRGNLALERSLRRANEVRVIRGMKDVMGPAAKVYVYDGLYKVQETWIEKGKSGCNIFKYKLVRNPGQPGAFSVWKSIQKWKESLSSRVALVLPDLTSGAETIPVSLVNDIDGEKGPTSFTYFPTLKYSKAFFLSQPAFGCNCRNACSPGDPNCSCIQKNDGEIPYTMTGSLVSRKPLIYECGPSCPCIPNCKNRVSQMGIKVRLEVFKTKDKGWGLRSWDPIRAGTFICEYAGEVIDKVRKGDEAGCDEYIFDTTRVYESFKWNYEPEFLEEESTEDAIEEYNIPSPLVISSKHIGNVARFMNHSCSPNLFWQPVLYEHNGQSFLHIAFYAIRHIPPLTELTFDYGITRSDGAEGETRRRKKCFCGSSKCRGFFC 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56987505 56990523 + Conep01aG0152000.1 Cone1ag1460 432151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1460 689 Gene3D SET domain 400 688 IPR046341 -
Cone1ag1460 689 SMART preset_2 406 500 IPR007728 GO:0005634(InterPro)|GO:0008270(InterPro)|GO:0042054(InterPro)
Cone1ag1460 689 SMART G9a_1 224 381 IPR003105 -
Cone1ag1460 689 MobiDBLite consensus disorder prediction 102 144 - -
Cone1ag1460 689 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 212 396 - -
Cone1ag1460 689 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 55 686 IPR051357 GO:0003690(PANTHER)
Cone1ag1460 689 ProSiteProfiles YDG domain profile. 229 377 IPR003105 -
Cone1ag1460 689 ProSiteProfiles Post-SET domain profile. 673 689 IPR003616 -
Cone1ag1460 689 ProSiteProfiles SET domain profile. 516 660 IPR001214 GO:0005515(InterPro)
Cone1ag1460 689 ProSiteProfiles Pre-SET domain profile. 452 513 IPR007728 GO:0005634(InterPro)|GO:0008270(InterPro)|GO:0042054(InterPro)
Cone1ag1460 689 Gene3D - 212 399 IPR036987 -
Cone1ag1460 689 Pfam Pre-SET motif 411 508 IPR007728 GO:0005634(InterPro)|GO:0008270(InterPro)|GO:0042054(InterPro)
Cone1ag1460 689 Pfam SAD/SRA domain 227 381 IPR003105 -
Cone1ag1460 689 SUPERFAMILY SET domain 416 686 IPR046341 -
Cone1ag1460 689 SMART set_7 516 666 IPR001214 GO:0005515(InterPro)
Cone1ag1460 689 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 91 688 IPR025794 GO:0042054(InterPro)
Cone1ag1460 689 SUPERFAMILY PUA domain-like 211 399 IPR015947 -
Cone1ag1460 689 Pfam SET domain 527 660 IPR001214 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0482 Cone-Chr10:2240865 Cone1ag1460 Cone-Chr1:56987505 2.04E-237 dispersed
Cone1ag1460 Cone-Chr1:56987505 Cone6ag0634 Cone-Chr6:3210666 5.07E-117 dispersed
Cone1ag1460 Cone-Chr1:56987505 Cone3ag0507 Cone-Chr3:2517390 1.57E-241 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45516 PF16275 SF1-HH 1.20E-26 No_clan Cone TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1460 K24405 - rcu:8276339 882.863