Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1460 ATGGAAAGAGGAGGGTCATCAGCTTACAGTTCTGTTCCAAATAATTCAGCTTGTATTGACAAGAACAGAGTTCTAGACATAAAACCACTTCGTCAATTAGCACCTATTTTCCCAAACACGCCTCATCAAGGCCATTCTCAAGCTTCCCCCTTGATGAGTTTATCTCCCTCCGGCCCTTTCCCGCCTGGATTTTCCACCTTTTACCCATTTAGCACTCCCCAATGGCCCGATGGTATGCCCGACCTCAACCACCAGGCTCCTTGCTACCCAACACCTCTCCGGGCTTTTAAAAGCACACAGGCCCATGAATCCAATGGAGACTATGAAGAATCTTACGACAACAGCCCCAAACGGCTATGTGGTTCTAAATCTCGTGGCTCTAATTCCTCTCAAAAGCTGAAGAAGAAACAGAAGAACAATCTTGACCCAAACCTTTCATTGTCTATTGTCGGTTGTAATGCACCTGGTATTAGTTCTGTACCTGGTATAACTCAATCTGAAAGAGATAATGGAGACAGGGATGTTGTTACTTGTGTTCGTATGACATATGATGCACTTCGTAGAAGGCTAAGTCAGCTTGAAGAGGTCAAGGAGTTGAGAAATGGGGTTAACAAGCGATCAGATTTAAGAGCTGGGAATATTTTGATGAGTACAGGGTTTAGAACTAACATGAAGAGGAGGATTGGGGCCATTCCTGGAGTTGAAATTGGAGACATATTTTTCTTCCGTATAGAATTGTGCGTGGTGGGGTTACATGCCCCTTCCATGGCTGGAATTGATTACATGAATTTCAAGGACGGTTTTGAGGATGAGCCAGTGGCTTTAAGCATTGTTTCGTCCGGAGGATATGAAGATGATGTTGAGGATTGTGATGTTTTGGTTTATACAGGGCATGGTGGGAATGCAAATTATAAAGACAAGCCAACTGCTGATCAGAAACTTGTGAGGGGTAATCTTGCTCTTGAGAGGAGCTTGCGTCGGGCCAACGAAGTACGCGTTATTCGAGGTATGAAAGATGTTATGGGTCCTGCAGCTAAAGTTTATGTCTATGATGGGTTGTATAAGGTCCAAGAGACTTGGATAGAGAAGGGAAAATCAGGTTGCAATATTTTCAAGTACAAATTGGTGAGGAATCCGGGCCAGCCAGGTGCCTTTTCAGTTTGGAAATCAATCCAGAAGTGGAAGGAAAGTTTGTCTTCAAGGGTTGCATTAGTCCTTCCAGATCTTACTTCAGGGGCAGAAACTATTCCCGTTTCACTTGTAAATGATATTGACGGTGAAAAGGGACCCACTTCTTTCACTTATTTTCCTACTCTTAAATACTCCAAAGCATTTTTTTTATCACAACCTGCTTTTGGCTGTAATTGTCGTAATGCATGCAGCCCAGGAGACCCCAATTGTTCCTGCATTCAAAAAAATGATGGTGAAATTCCATATACTATGACTGGAAGTTTAGTGAGCCGTAAGCCGTTGATCTATGAATGTGGGCCCTCATGCCCCTGCATTCCGAACTGTAAAAACCGAGTATCTCAAATGGGTATAAAAGTTCGGCTTGAAGTGTTTAAAACAAAGGATAAGGGATGGGGACTGAGGTCATGGGATCCTATTAGGGCCGGAACGTTTATCTGTGAATATGCAGGTGAAGTTATAGATAAAGTCAGAAAGGGTGATGAAGCGGGATGCGATGAGTATATCTTTGATACGACCCGTGTTTATGAATCATTCAAGTGGAATTATGAGCCAGAGTTTTTGGAAGAAGAGAGTACTGAGGATGCTATTGAGGAGTACAACATCCCTTCTCCTTTAGTCATAAGTTCCAAGCACATTGGAAATGTGGCTCGGTTTATGAATCATAGTTGCTCGCCCAATCTTTTCTGGCAGCCAGTTTTATATGAGCATAACGGCCAATCATTTCTCCATATCGCCTTTTATGCAATTAGACACATCCCTCCATTAACAGAGTTGACATTTGATTATGGGATTACCCGCTCTGATGGGGCTGAGGGTGAGACACGCAGGAGAAAGAAATGCTTCTGTGGATCATCAAAATGTCGGGGCTTTTTTTGTTAA 2070 43.09 MERGGSSAYSSVPNNSACIDKNRVLDIKPLRQLAPIFPNTPHQGHSQASPLMSLSPSGPFPPGFSTFYPFSTPQWPDGMPDLNHQAPCYPTPLRAFKSTQAHESNGDYEESYDNSPKRLCGSKSRGSNSSQKLKKKQKNNLDPNLSLSIVGCNAPGISSVPGITQSERDNGDRDVVTCVRMTYDALRRRLSQLEEVKELRNGVNKRSDLRAGNILMSTGFRTNMKRRIGAIPGVEIGDIFFFRIELCVVGLHAPSMAGIDYMNFKDGFEDEPVALSIVSSGGYEDDVEDCDVLVYTGHGGNANYKDKPTADQKLVRGNLALERSLRRANEVRVIRGMKDVMGPAAKVYVYDGLYKVQETWIEKGKSGCNIFKYKLVRNPGQPGAFSVWKSIQKWKESLSSRVALVLPDLTSGAETIPVSLVNDIDGEKGPTSFTYFPTLKYSKAFFLSQPAFGCNCRNACSPGDPNCSCIQKNDGEIPYTMTGSLVSRKPLIYECGPSCPCIPNCKNRVSQMGIKVRLEVFKTKDKGWGLRSWDPIRAGTFICEYAGEVIDKVRKGDEAGCDEYIFDTTRVYESFKWNYEPEFLEEESTEDAIEEYNIPSPLVISSKHIGNVARFMNHSCSPNLFWQPVLYEHNGQSFLHIAFYAIRHIPPLTELTFDYGITRSDGAEGETRRRKKCFCGSSKCRGFFC 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56987505 56990523 + Conep01aG0152000.1 Cone1ag1460 432151

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1460 689 Gene3D SET domain 400 688 IPR046341 -
Cone1ag1460 689 SMART preset_2 406 500 IPR007728 GO:0005634(InterPro)|GO:0008270(InterPro)|GO:0042054(InterPro)
Cone1ag1460 689 SMART G9a_1 224 381 IPR003105 -
Cone1ag1460 689 MobiDBLite consensus disorder prediction 102 144 - -
Cone1ag1460 689 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 212 396 - -
Cone1ag1460 689 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 55 686 IPR051357 GO:0003690(PANTHER)
Cone1ag1460 689 ProSiteProfiles YDG domain profile. 229 377 IPR003105 -
Cone1ag1460 689 ProSiteProfiles Post-SET domain profile. 673 689 IPR003616 -
Cone1ag1460 689 ProSiteProfiles SET domain profile. 516 660 IPR001214 GO:0005515(InterPro)
Cone1ag1460 689 ProSiteProfiles Pre-SET domain profile. 452 513 IPR007728 GO:0005634(InterPro)|GO:0008270(InterPro)|GO:0042054(InterPro)
Cone1ag1460 689 Gene3D - 212 399 IPR036987 -
Cone1ag1460 689 Pfam Pre-SET motif 411 508 IPR007728 GO:0005634(InterPro)|GO:0008270(InterPro)|GO:0042054(InterPro)
Cone1ag1460 689 Pfam SAD/SRA domain 227 381 IPR003105 -
Cone1ag1460 689 SUPERFAMILY SET domain 416 686 IPR046341 -
Cone1ag1460 689 SMART set_7 516 666 IPR001214 GO:0005515(InterPro)
Cone1ag1460 689 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 91 688 IPR025794 GO:0042054(InterPro)
Cone1ag1460 689 SUPERFAMILY PUA domain-like 211 399 IPR015947 -
Cone1ag1460 689 Pfam SET domain 527 660 IPR001214 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1460 K24405 - - rcu:8276339 882.863
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0482 Cone-Chr10:2240865 Cone1ag1460 Cone-Chr1:56987505 2.04E-237 dispersed
Cone1ag1460 Cone-Chr1:56987505 Cone6ag0634 Cone-Chr6:3210666 5.07E-117 dispersed
Cone1ag1460 Cone-Chr1:56987505 Cone3ag0507 Cone-Chr3:2517390 1.57E-241 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone1ag1460 . 14 688 Su(var)3-9 homologs AT5G04940 53.4 2.0e-213 739.6
Cone1ag1460 . 5 688 Su(var)3-9 homologs AT1G73100 52.9 2.2e-207 719.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004080 1 3 2 2 2 1 2 1 1 1 1 1 2 1 2 2 1 3 2 1 1 1 1 1 1 1 1 2 2 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45516 PF16275 SF1-HH 1.20E-26 No_clan Cone TR