Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1464 ATGGTGAAGATACAAATGAAGTTGATTTCTCTGCAATTTCTAACTTTTCTTCTTCTAATTGCTTTTCTCATGCTCGCTCAAGGCGCTTCCTATACGATATCTAATGAGATAGTCAGCATTCCCTCGGCTGCTTCCGAAACATGCCCAGCTGGCTGGTTAACAATGCCAAACAGGACAAAGTGCTTGGGTTACATCAGAAGCCCTCTATCATGGAATGATTCAGAGATTTACTGTAAAGAACACTATGGTGGAAATTTAGCGGTCTTGACATTTGAGCAGGAGCTAAGTTTGGCAAGAAATATGTGTAGTGAGAATGTAAGCGGGTGCTGGGTTGGAGGTAGAGGCATTGGCTCTAATTACGGTTTTGTTTGGGAGTGGTCGGATAACACCTCCATTTGGAATGAATCTACTTTTCTCGGACCCACTTTCAAATCCAATTGCACCAGTTTGTCTTGCCAACTGAATAAATCAGTTGAACTATGTGCATTAATTGTCAATGAAACAATATTCCTCGACAATGGGAGCTGCTCAGTTTCTCACCCTTTTATATGCATGCTCCACTTAGATAGTAAATGCTCTCATATGCATTGCCACAAAGACTACCCTATCATACTTTTCTCCATAAGTGGCTTGATACTTGTCACAGCATTAGCTGTGGTTATATGGTTACTTGTATACAAGAGGAGCAAGAAGCATAGAAGATCTAGAAAACTATCAAACTCAGCAGATGCTGCATTGGTCCCACCATCATGGAGAGTCTTCACCAAAGAGGAACTTAGATCAATCACAAAGAGCTTCAGTGAGGGAAATCGTCTACCGGGAGACTCCAAGGCAGGTGGGACCTACACTGGCCTTTTACCGGATGGTTCGAGAGTGGTAGTTAAAAGGTTGAAAAGGATTACTTACCAGAGGAAAAAAGAGTTCTATTCTGAGATCGGAAGGGTTGCAAAGCTTCACCACCCGAATCTTGTTGCTGTGAAAGGATGCTGCTATGATCATGGGGACCGCTACATTGTTTATGATTTCATCATGAGTGGTCCATTAGATAGATGGTTACACCACATTACAAGGGGGGGTAGGAGCTTAGATTGGGCCATGAGAATGAAAATTGCCATAACTCTTGCTCAAGGAATTGCGTTTTTACATGACAAGGTAAAGCCGCTTGTGGTTCATCGGGATATCCGTGCCAATAATGTACTTATCGATGAGGAATTTGGGGCTCACTTGATGGGGGTTGGTCTCTCGAAATTCATATCGTACGATGTAATGCATGAGAGGACAATGATGGCTGGTGGAACCTACGGGTACCTTGCTCCGGAATTTGTATTCAGAAACGAGCTAACAACAAAGAGTGATGTATACAGTTTTGGAGTGTTGCTTCTTGAAATAGTGAGTGGTCGGAGGCCCGCTCAAGCAGTTGATTCCGTGGGTTGGCAGAGTTTATTTGAATGGGCCACGCCCCTAGTCCAGGCTCATAGATACTCCGAGCTATTGGACCCACATATAACTTCCTCTTCTTCATTGGATATTCCAGAGGTTGAGGATATTCAGAAGGTGGTTGATCTTGTCTATGCATGCACTCAACATGTCCCGTCTATGCGTCCGAGAATGTCTCATGTTGTTCATCAGCTACAACAGTTAGCATATCCACCTGTTGTTATTAAGTAA 1668 43.29 MVKIQMKLISLQFLTFLLLIAFLMLAQGASYTISNEIVSIPSAASETCPAGWLTMPNRTKCLGYIRSPLSWNDSEIYCKEHYGGNLAVLTFEQELSLARNMCSENVSGCWVGGRGIGSNYGFVWEWSDNTSIWNESTFLGPTFKSNCTSLSCQLNKSVELCALIVNETIFLDNGSCSVSHPFICMLHLDSKCSHMHCHKDYPIILFSISGLILVTALAVVIWLLVYKRSKKHRRSRKLSNSADAALVPPSWRVFTKEELRSITKSFSEGNRLPGDSKAGGTYTGLLPDGSRVVVKRLKRITYQRKKEFYSEIGRVAKLHHPNLVAVKGCCYDHGDRYIVYDFIMSGPLDRWLHHITRGGRSLDWAMRMKIAITLAQGIAFLHDKVKPLVVHRDIRANNVLIDEEFGAHLMGVGLSKFISYDVMHERTMMAGGTYGYLAPEFVFRNELTTKSDVYSFGVLLLEIVSGRRPAQAVDSVGWQSLFEWATPLVQAHRYSELLDPHITSSSSLDIPEVEDIQKVVDLVYACTQHVPSMRPRMSHVVHQLQQLAYPPVVIK 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56998299 57001077 + Conep01aG0152400.1 Cone1ag1464 432155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1464 555 ProSiteProfiles C-type lectin domain profile. 57 185 IPR001304 -
Cone1ag1464 555 SUPERFAMILY C-type lectin-like 16 187 IPR016187 -
Cone1ag1464 555 Gene3D - 31 187 IPR016186 -
Cone1ag1464 555 SUPERFAMILY Protein kinase-like (PK-like) 242 545 IPR011009 -
Cone1ag1464 555 FunFam C-type lectin receptor-like tyrosine-protein kinase 244 342 - -
Cone1ag1464 555 SMART CLECT_2 48 185 IPR001304 -
Cone1ag1464 555 FunFam C-type lectin receptor-like tyrosine-protein kinase At1g52310 343 555 - -
Cone1ag1464 555 Pfam Lectin C-type domain 68 185 IPR001304 -
Cone1ag1464 555 ProSiteProfiles Protein kinase domain profile. 267 552 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag1464 555 ProSitePatterns Tyrosine protein kinases specific active-site signature. 389 401 IPR008266 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone1ag1464 555 SMART tyrkin_6 272 544 IPR020635 GO:0004713(InterPro)|GO:0006468(InterPro)
Cone1ag1464 555 PANTHER OS01G0750732 PROTEIN 140 547 IPR050885 -
Cone1ag1464 555 Gene3D Transferase(Phosphotransferase) domain 1 344 549 - -
Cone1ag1464 555 Pfam Protein tyrosine and serine/threonine kinase 289 544 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone1ag1464 555 Gene3D Phosphorylase Kinase; domain 1 226 342 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1464 Cone-Chr1:56998299 Cone16ag0596 Cone-Chr16:7751145 5.45E-62 dispersed
Cone1ag1464 Cone-Chr1:56998299 Cone5ag0453 Cone-Chr5:1917985 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82512 PF00827 Ribosomal_L15e 2.10E-91 CL0652 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1464 - - - 0.0