Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1470 ATGTCGGACGGTCAAGAAACTGATAAGAACATTGAGATTTGGAAGATTAAGAAACTGATTAAGGCGCTTGAGGCTGCTAGAGGGAATGGAACAAGCATGATCTCTCTCATCATGCCACCGCGTGATCAAATTTCTAGGGTTACCAAGATGCTTGGTGATGAATTTGGCACGGCTTCAAACATTAAGAGCAGGGTTAATCGCCAATCTGTGTTAGGTGCAATCACATCTGCTCAGCAGCGTCTTAAGCTCTACAACAAAGTTCCTCCCAATGGGCTTGTGCTTTACACGGGGACAATTGTGACCGATGATGGGAAGGAAAAAAAGGTGACAATTGATTTTGAACCTTTTAGGCCCATAAATGCCTCTCTTTACCTCTGTGACAACAAGTTCCATACAGAAGCCCTGAATGAACTTCTGGAGTCTGATGACAAGTTTGGTTTCATAGTCATGGATGGAAATGGGACTCTCTTTGGGACATTGAGTGGTAACTCTCGTGAGGTTCTTCACAAATTCAGCGTTGACCTCCCAAAGAAACACGGAAGAGGAGGGCAATCAGCTCTTCGGTTTGCTCGTCTTCGAATGGAGAAGCGTCACAACTATGTAAGGAAGACAGCGGAGCTCGCAACACAGTTTTTCATCAATGCTGCCACTAGTCAGCCCAATGTTGCTGGACTAATACTTGCTGGATCAGCTGACTTTAAAACAGAGCTCAGTCAGTCTGATATGTTTGATCCTCGCCTTCAAGCCAAGATATTGAATGTGGTGGATGTTTCTTATGGAGGGGAGAATGGATTCAATCAAGCCATCGAGCTCTCAGCCGAGATCCTATCCAATGTTAAGTTCATACAGGAGAAAAAAATAATAGGTAAATACTTTGAGGAGATAAGTCAGGATACTGGGAAGTATGTTTTTGGTGTGGATGACACACTGAAAGCTCTGGAGATGGGTGCTGTGGAGATACTTCTTGTGTGGGAAAATTTAGACATCAATAGATTTGTCTTAAAGAACAATGCCACTGCTGAGATTATCATCAAGCACTTGAACAAGGAGCAAGAAGCAAACCAGAGCAACTTCCGAGATGCTGCCACCAATGCAGACTTAGAGGTTCAAGAGAAAACGCTACTGTTGGAATGGTTTGCGAATGAGTACAAGAAATTTGGTTGTACTCTGGAGTTTGTTACCAATAAGTCTCAAGAGGGATCTCAATTCTGCAGAGGTTTTGGTGGTATAGGCGGGATCCTCCGCTACCAGCTTGATATTAGAACTTTTGACGACCTTTCGGATGAAGAAGTATATGAGTCTGAATAG 1308 43.5 MSDGQETDKNIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNSREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINAATSQPNVAGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKKIIGKYFEEISQDTGKYVFGVDDTLKALEMGAVEILLVWENLDINRFVLKNNATAEIIIKHLNKEQEANQSNFRDAATNADLEVQEKTLLLEWFANEYKKFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDIRTFDDLSDEEVYESE 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57025951 57028692 + Conep01aG0153000.1 Cone1ag1470 432161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1470 435 Pfam eRF1 domain 3 281 418 IPR005142 -
Cone1ag1470 435 SMART eRF1_1_2 4 140 IPR005140 -
Cone1ag1470 435 Pfam eRF1 domain 1 17 139 IPR005140 -
Cone1ag1470 435 Gene3D eRF1 domain 2 136 277 IPR042226 -
Cone1ag1470 435 Gene3D eRF1 domain 1 2 135 IPR024049 -
Cone1ag1470 435 NCBIfam peptide chain release factor aRF-1 12 417 IPR004403 GO:0003747(InterPro)|GO:0006415(InterPro)
Cone1ag1470 435 Gene3D - 279 435 IPR029064 -
Cone1ag1470 435 SUPERFAMILY L30e-like 278 420 IPR029064 -
Cone1ag1470 435 Pfam eRF1 domain 2 144 277 IPR005141 -
Cone1ag1470 435 FunFam Eukaryotic peptide chain release factor subunit 1 2 135 - -
Cone1ag1470 435 FunFam Peptide chain release factor subunit 1 279 435 - -
Cone1ag1470 435 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 2 429 IPR004403 GO:0002184(PANTHER)|GO:0003747(InterPro)|GO:0005829(PANTHER)|GO:0006415(InterPro)|GO:0016149(PANTHER)|GO:0018444(PANTHER)|GO:1990825(PANTHER)
Cone1ag1470 435 SUPERFAMILY Translational machinery components 142 276 - -
Cone1ag1470 435 FunFam Eukaryotic peptide chain release factor subunit 1 136 277 - -
Cone1ag1470 435 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 6 140 IPR024049 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1470 Cone-Chr1:57025951 Cone5ag0456 Cone-Chr5:1942219 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1470 K03265 - csv:101218139 801.971