Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1484 ATGGCAGGGATGTTTCATGAGGATGGATCATCATCTGTAACTTCGTCACCCTTAAACTTTTTTCCCTGGTCCTTTTCCCCCAGCTTAGGATCACCATTTCCATTTTTCCGAGACCTCAATTTCGAACAAAGAGGTTTAGTCCTCATCAACCTCCTCAAAGCCTGTGCTTTCCAAGTCGCAACCAGAAATATCGAGAATGCCAATATCGCCCTCGATCAAATATCCCACCTTGCCTCTCCAGACGGAGACACCATGCAACGAATCGCCGCTTATTTCACAGAAGCACTTGCCGATCGAGTCCTTAAACTCTGGCCCGGTCTGCATAAAGCCCTTAATTCTACGAAAATATCTTCCGTCTCAGAAGAGGTTCTAGTCCAAAGATTCTTCTTTGATCTCTGCCCATTCTTAAAACTTGCATATGTGATCACAAACCAGGCTATTGTAGAAGCAATGGAAGGTGAAAAGCATATCCATATCATCGATCTTAACTCGTCTGAGCCTGCTCAATGGATAGATCTTCTCCAGACGTTGAAAGAGCGGCAAGAGGGCCCTCCTCATTTGAGAATTACAGGGATTCACGAGCAGAAGGAGGTCCTAGAGCAAATGGCTCTTCGCTTGACCGAAGAAGCCGAGAAATGGGCTATTCCTTTCCAGTTCACTCCCATTGTTAGCAAACTAGAAGACCTTGACCTTGAAACCTTACGAATCAAAACGGGTGAAGCTCTTGCTGTGAGCTCAGTACTTGAACTTCATTCCCTTTTAGCCGCTGATGATGATCGGAGAATTAACTCCCCATCAACGGTTAAGAATTTGCAGAAAATGATGCATATGAAGCTGAGAACTTTAGGAGAATGGCTCGAGAAAGATTCAATGCAAGTTAGCCCAGGACCTGATTCGGGTTCATCCCCATTGTCATCATTTAACCCTTGTCCAAAAATGGAAGCTTTTCTGAACACACTATGTGGGCTATCACCAAATGTGATGGTAATAACTGAGCAAGAATCGAACCTTAATGGGTTTAATTTAACTGAGAGAGTCGAAGAGGCGTTGAACTTCTACGCTGCATTGTTTGATTGCTTGGAGTCTACGGTTCCGAGATCTTCCATAGAGAGGCAGAAGGTGGAGAAAATGCTTTTCGGGAAGGAGATTAAGAATATAATAGCATGTGAAGGGGTGGAGAGGAAAGAGAGGCACGAGAAGCTGGAGAAATGGATAATGAGGCTTGAATTGGCTGGTTTTGGGAGAGTGCCTTTTAGCTACCACGGAATGATGCTAGCGACTGGATTGTTACAAAGCAATGGTTATAATGGGTATAAGATCAAAGATGAGAATGGCTGTTTGTTTATTTGCTGGCAAGATACTCCGCTTTTTTCGGTTTCTGCTTGGAGGTTCCGGAGGTTCCGCCGGGACTATTGA 1416 44.49 MAGMFHEDGSSSVTSSPLNFFPWSFSPSLGSPFPFFRDLNFEQRGLVLINLLKACAFQVATRNIENANIALDQISHLASPDGDTMQRIAAYFTEALADRVLKLWPGLHKALNSTKISSVSEEVLVQRFFFDLCPFLKLAYVITNQAIVEAMEGEKHIHIIDLNSSEPAQWIDLLQTLKERQEGPPHLRITGIHEQKEVLEQMALRLTEEAEKWAIPFQFTPIVSKLEDLDLETLRIKTGEALAVSSVLELHSLLAADDDRRINSPSTVKNLQKMMHMKLRTLGEWLEKDSMQVSPGPDSGSSPLSSFNPCPKMEAFLNTLCGLSPNVMVITEQESNLNGFNLTERVEEALNFYAALFDCLESTVPRSSIERQKVEKMLFGKEIKNIIACEGVERKERHEKLEKWIMRLELAGFGRVPFSYHGMMLATGLLQSNGYNGYKIKDENGCLFICWQDTPLFSVSAWRFRRFRRDY 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57078917 57080641 + Conep01aG0154400.1 Cone1ag1484 432175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1484 471 ProSiteProfiles GRAS family profile. 39 463 IPR005202 -
Cone1ag1484 471 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 46 462 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cone1ag1484 471 Pfam GRAS domain family 49 463 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1515 Cone-Chr11:10668604 Cone1ag1484 Cone-Chr1:57078917 2.69E-189 dispersed
Cone1ag1484 Cone-Chr1:57078917 Cone2ag0028 Cone-Chr2:167890 3.61E-67 dispersed
Cone1ag1484 Cone-Chr1:57078917 Cone5ag0474 Cone-Chr5:2001375 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45518 PF10191 COG7 2.80E-270 CL0294 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1484 - - - 0.0