Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1491 ATGTATGTTCTTGGAAATAGAAGCATGTCATCTGGAAATCCTTATTTTGACGACATGCGGAGTGAACCAGAGGTGATCGATCCTCCCGAAATTGAAGACATTGCGGATGTTGGTGAAAGCGTTAATGATTCTTCTCAGAGTGTTCTAAAACAGAATGTAATAGTTTCCAGCAGTGTTCGTGAGCTATTGGAATGCCCTGTCTGCTTGAATGCTATGTACCCTCCTATTCATCAGTGTTCAAATGGTCACACTTTGTGCTCTGATTGCAAGCCCAGGGTGCACAACCGGTGTCCCACTTGCAGGCACGAGCTTGGCAATATTAGATGTCTTGCATTGGAGAAGGTGGCTGCATCTCTGGATCTTCCTTGTAAATATCATACTTTTGGTTGCCTTGGGATATACCCTTATTACAGCAAGCTGAAACATGAATCCCAGTGTTCCTATAGACCCTATAATTGCCCCTATGCTGGATCAGAATGCACAGTCATTGGTGACATACCATATTTGGTGGCCCACCTGAAAGATGATCACAAAGTTGACATGCACGATGGGAGCACTTTCAACCATCGCTATGTCAAATCTCATCCACAAGAGGTTGAAAATGCCACATGGATGCTAACGGTCTTCAGCTGCTTCGGTCAGTATTTTTGCTTGCACTTTGAAGCATTTCAACTGGGAATGGCTCCTGTCTACATAGCTTTCCTGCGTTTTATGGGTGATGATAATGAGGCAAAGAACTACAGCTACAGTCTAGAGGTGGGTGGAAATGGGAGGAAGATGATCTGGCAAGGAGTTCCAAGGAGTATACGGGACAGTCACCGGAAAGTGCGGGACAGTTTTGATGGTCTGATAATTCAATGCAACATGGCTCTCTTCTTCTCGGGCGGGGATAGGAAGGAACTAAAGGTTAGAGTGACTGTGCTGTATCTCTTCTCGGGCGGGGATAGGAAGGAACTAAAGCTCAGAGTGACTGGTAGGATTTGGAAAGAACAAGTTGAAGAACGAGACAAAGATTTCATACCGGAAGTTGCTCTACCACCGGTCGTTAATGGTGATTATCTCCACGTTGGTAGGAGCGGGAGGATTAACCTAACTCTTATCCCGCCTTTCCTCTCTTTCCTCGTTATTGGAGAAAGTTTTTGGTAG 1146 45.2 MYVLGNRSMSSGNPYFDDMRSEPEVIDPPEIEDIADVGESVNDSSQSVLKQNVIVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSDCKPRVHNRCPTCRHELGNIRCLALEKVAASLDLPCKYHTFGCLGIYPYYSKLKHESQCSYRPYNCPYAGSECTVIGDIPYLVAHLKDDHKVDMHDGSTFNHRYVKSHPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMIWQGVPRSIRDSHRKVRDSFDGLIIQCNMALFFSGGDRKELKVRVTVLYLFSGGDRKELKLRVTGRIWKEQVEERDKDFIPEVALPPVVNGDYLHVGRSGRINLTLIPPFLSFLVIGESFW 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57102647 57105437 + Conep01aG0155100.1 Cone1ag1491 432182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1491 381 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 174 307 IPR008974 GO:0005515(InterPro)
Cone1ag1491 381 CDD Sina 179 306 - -
Cone1ag1491 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 173 IPR013083 -
Cone1ag1491 381 CDD RING-HC_SIAHs 63 101 - -
Cone1ag1491 381 FunFam E3 ubiquitin-protein ligase SINAT3 117 173 - -
Cone1ag1491 381 SUPERFAMILY RING/U-box 64 106 - -
Cone1ag1491 381 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 65 100 IPR049548 -
Cone1ag1491 381 SUPERFAMILY TRAF domain-like 118 307 - -
Cone1ag1491 381 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 51 306 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Cone1ag1491 381 Pfam Sina, TRAF-like domain 209 306 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Cone1ag1491 381 ProSiteProfiles Zinc finger SIAH-type profile. 118 178 IPR013010 GO:0008270(InterPro)
Cone1ag1491 381 FunFam E3 ubiquitin-protein ligase SINAT5-like 23 116 - -
Cone1ag1491 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 117 IPR013083 -
Cone1ag1491 381 Pfam Sina, zinc finger 114 189 - -
Cone1ag1491 381 FunFam E3 ubiquitin-protein ligase SINAT5-like 174 306 - -
Cone1ag1491 381 ProSiteProfiles Zinc finger RING-type profile. 65 101 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1491 Cone-Chr1:57102647 Cone5ag0998 Cone-Chr5:4312321 1.12E-188 dispersed
Cone1ag1491 Cone-Chr1:57102647 Cone5ag0480 Cone-Chr5:2021704 4.49E-225 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1491 K04506 - rcu:8270897 587.8