Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1492 ATGTCGACAATAAACCAAACTGCTGATCTTAGCCATGTCTCTGATTCGGGGAGGAATTGTCTATATGATCTCTTGTATTCGGATTCAAACTCACCGGGCTGGAACTGGGAAACATCTCAAAGGACATGCACACAAAAAAGGCTGGAGGACCTGTTGAGTCAATCAGGCAATGAGCTCTGTGCAGATTGTGGGTCTCCAGATCCCAAATGGGTGTCTCTTAATCTGGGGGTGTTTATCTGCATCAAATGCTCTGGAGTACACAGAAGCCTTGGAGTTCATATCTCGAAGGTCCTGTCTGTAAATCTAGATACATGGACAGATGAACAAATAGATGCTGTGATAAGTATGGGCGGAAATTTGAAGGTAAATAAGAAGTATGAAGCTTGCATCCCAGGAGACCTCATGAAACCAAAAGCAGATTCCTCTACAAAGGACCGCAAGGACTTTATAAGAAGAAAATATGATCTGCAAGAGTTTTTAAGCTCAGAAGATCAATGTTCTTGTCCTTTTCCGCCACTTCACAAAAGGCCCTCATACAGCTCCACAAAACCTTCAAGCAAGCAAAGCGGCCAAGATAAGAAAAAACATGAAAAAAATGGAAGCAGACATCTTATCGGGCATGCATTTCGTCAGAGCCGGGGAAGAAAAGATCCCGACCTAAGTACGAAGAGGAGTAACTCATTGGCGGGGATGGTAGAATTTGTTGGTTTGATAAAGGTCAATGTGGTCAAGGGTACGGACCTAGCAATCCGGGATGTGATGACCAGCGATCCTTACGTAATTCTTGCATTGGGTAACCAGTCAGTGAGAACACGAGTCATAAAGAACAATCTTAATCCAATATGGAACGAGAGCTTAATGTTATCGATCCCAGATCAGATTCCTCCTCTAGAAGTGTTTGTATATGACAAGGATAAATTCAAAACGGACGACTTTATGGGAGATGCCGAAATTAACATTCAGCCACTGCTAAATGCAGCAAAAGCATACGAAACCAGCACGACGGATTCAATCCTGGTAGGGAACTGGATAGCAAATGACGAAAACGCCCTTGTAGAAGACGGAATCATAAGCATTATAGATGGAAAGGTCAAACAAACAGTGTCTCTAAGGTTGCAGAATGTGGAAAGAGGTGTTCTAGATATAGAACTTGAATGTGTCCCTCTCACTCAATAG 1176 42.86 MSTINQTADLSHVSDSGRNCLYDLLYSDSNSPGWNWETSQRTCTQKRLEDLLSQSGNELCADCGSPDPKWVSLNLGVFICIKCSGVHRSLGVHISKVLSVNLDTWTDEQIDAVISMGGNLKVNKKYEACIPGDLMKPKADSSTKDRKDFIRRKYDLQEFLSSEDQCSCPFPPLHKRPSYSSTKPSSKQSGQDKKKHEKNGSRHLIGHAFRQSRGRKDPDLSTKRSNSLAGMVEFVGLIKVNVVKGTDLAIRDVMTSDPYVILALGNQSVRTRVIKNNLNPIWNESLMLSIPDQIPPLEVFVYDKDKFKTDDFMGDAEINIQPLLNAAKAYETSTTDSILVGNWIANDENALVEDGIISIIDGKVKQTVSLRLQNVERGVLDIELECVPLTQ 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57105587 57108002 + Conep01aG0155200.1 Cone1ag1492 432183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1492 391 ProSiteProfiles ARF GTPase-activating proteins domain profile. 45 167 IPR001164 GO:0005096(InterPro)
Cone1ag1492 391 ProSiteProfiles C2 domain profile. 212 333 IPR000008 -
Cone1ag1492 391 Gene3D Arf GTPase activating protein 29 168 IPR038508 -
Cone1ag1492 391 SMART C2_3c 237 332 IPR000008 -
Cone1ag1492 391 PRINTS HIV Rev interacting protein signature 57 76 IPR001164 GO:0005096(InterPro)
Cone1ag1492 391 PRINTS HIV Rev interacting protein signature 76 93 IPR001164 GO:0005096(InterPro)
Cone1ag1492 391 PRINTS HIV Rev interacting protein signature 97 118 IPR001164 GO:0005096(InterPro)
Cone1ag1492 391 SUPERFAMILY ArfGap/RecO-like zinc finger 44 160 IPR037278 -
Cone1ag1492 391 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 233 328 IPR035892 -
Cone1ag1492 391 MobiDBLite consensus disorder prediction 168 223 - -
Cone1ag1492 391 Gene3D C2 domain 235 384 IPR035892 -
Cone1ag1492 391 FunFam stromal membrane-associated protein 1 isoform X1 33 165 - -
Cone1ag1492 391 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 41 391 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Cone1ag1492 391 SMART arf_gap_3 45 164 IPR001164 GO:0005096(InterPro)
Cone1ag1492 391 Pfam Putative GTPase activating protein for Arf 46 161 IPR001164 GO:0005096(InterPro)
Cone1ag1492 391 Pfam C2 domain 237 326 IPR000008 -
Cone1ag1492 391 CDD ArfGap 48 154 - -
Cone1ag1492 391 CDD C2_ArfGAP 235 378 - -
Cone1ag1492 391 MobiDBLite consensus disorder prediction 188 222 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1492 Cone-Chr1:57105587 Cone5ag1000 Cone-Chr5:4320413 1.00E-147 dispersed
Cone1ag1492 Cone-Chr1:57105587 Cone5ag0481 Cone-Chr5:2024642 1.81E-255 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1492 K12486 - mtr:11424187 493.426