Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1510 ATGGGCTCACCTGGTATGGAAAAGATGGAAGACAGGAAGCTGTCTGTCACAACAGCCAATAATTCACTGACAGGCGTTCACCAGCAGAGTTCTGAAACTAGATTTAGAGATTTCTGCAAGAATGAGTTATCATTGGAGGAGGACATGCAAATCCAAGCTTTGAAGCTTTTTAAGGAAACTAACAATCTCCTGTTGACTAATATACAAGCCATCGGAAGTGGAGTGCCTGAAGAATCAGAGCGATTTTGGTATGCCTTTGTTTTATACTCTGTGAAGAGGTTGAGTGACAAGAATGCTGATAATACACAAGAGGGGTCTGATTTATGTCAGATTTTGAGAGCTGCAAAGTTAAACATTGTGGATTTTTTCAAAGAGCTACCTCAGTTTATTGTTAAGGCTGGTCCAGTTTTAAGTAATCTGTATGGGACAGATTGGGAAGTCAGAATCGAGGCAAAGGAGTTGCAGGCTAATTTTGTGCACCTGAGCCTCTTAAGCAAGTACTATAAACGTGTATACTGGGAATTCTTCTCAACAAGTGATGCCAATGTCGATAAGGAGCCCGGTGTTACTAGTACCACTGGTTATGTGTCAGACTACCATCGTTTTGGATGGTTACTATTTTTGGCCCTTCGTGTACATGCATTCAGCCGGTTTAAGGACCTAGTAACTTGCACCAACGGTTTGGTCTCTATTTTGGCAATTTTAATCATTCATGTTCCCATTCGCTTCAGAGACTTCGACATTCTTGACTCTCAACGCTTTGTTAAGAAAGGCAACAAAGGAGTGGATCTACTTGGATCACTTTGCAGCATCTATGACGCTTCAGAAGAGGAAGTGAAGAAAACAATGGAAAAGGCAAATAACTTGATACAAGATATTTTGAAGAAGAAGCCATGTTTGGCTTCAGAGTGTAGTAATAAAAATTTAGAGAATTTAGACACAGATGGTTTGATATATTTTGAAGGTCTCATGGAGGAGTCATCTTTGTCGTCCAGTTTAGACATTCTAGAAAGGGACTATGATGATGCAGTTCGTAATAAGGTTGATTTGGATGAGAGGGTATTCATTAATGGAGAGGACAGTCTACTTGGGTCCGGCAGCTTGTCGACGGGTGCTGTTAATATAAGTGGCATAAAGAGAAAGTTTGACTCGATTGCATCGCCTGCAAGGACAATCACAAGTCCACTTTCTCCCCTTAGGTCTCCTGCTTCTCATGCCAATGGAACTCTTGCTGGTGCTAATGCAAAGATAGCAGCTACACCAGTGAGCACGGCAATGACAACAGCGAAGTGGCTTCGGACTATTATTTCTCCACTTTCAGAAAGACCCTCAGCAGAGCTGGAACGCTTTCTAGCATCATGTGATCGAGATGTTACTAATGATGTTGTCCGCAGGGCTCACATAATACTAGAGGCTATATTTCCAAGTAGTACTCTGGGAGAGCGTTGTATAGCTGGATGCCTTCAGAGCTCAAATCTCATGGACAATATCTGGGCAGAACAGCGAAGACTGGAAGCCCTAAAATTATATTATAGGGTTTTGGAAGCAATGTGTAGAGCAGAAGCCCAAATATTGCATGCAACTAATTTGACCTCTCTACTCACTAATGAGAGATTCCATAGATGTATGCTTGCTTGCTCTGCTGAGCTAGTTTTGGCAACTCATAAAACTGTTACAATGTTGTTTCCTGCTGTTTTAGAGAGAACGGGCATTACAGCTTTTGATCTTAGTAAGGTGATAGAGAGTTTCATTAGACATGAGGACTCTCTCCCAAGAGAATTGAGGCGACACCTAAATTCCTTAGAAGAACGACTTTTGGAGTGCATGGTATGGGAAAAGGGTTCTTCAATGTATAATTCTTTGATAGTTGCAAGACCTATTCTTGCAACAGAAATAAACCGTATCGGTTTATTGGCAGAACCCATGCCTTCTCTAGATGCAATTGCCGCACACATAAATTTTTCTGGCACTGGGATGCCCTCATTGCCTAATTCCCAAAAGCATGAGAGTTCAGTGGGTCAGAATGGGGATATCAGATCTCCAAAAAGACTCTGCATGGATAATCGAAGTGTATTAGTGGAGCGTAATTCCTTTACTTCTCCGGTGAAGGATCGACTTCTAGCCTTCAGCAACCTTAAAGCCAAGCTACCTCCGCCTCCGCTACAGTCTGCATTTGCAAGTCCAACACGGCCTAATCCTGGAGGAGGAGGCGAAACATGTGCAGAAACTGGAATAAACATATTCTTTAACAAGATTACCAAGTTGGCTGCTGTGAGAGTCAATGGCATGGTTGAAAGGCTGCAACTATCTCAACAGATCAGGGAGAATGTCTACTGCCTTTTTCAACAAGTTCTAAGTCAGAAGACATCTCTCTTCTTCAATCGTCATATAGACCAGATCATCCTTTGCTGTTTCTATGGAGTTGCTAAGATATCTCAACTGAACCTGACTTTTAAGGAAATCATTTACAACTACAGGAAGCAACCACAATGTAAACCACAAGTTTTCCGCAGTGTGTTTGTTGATTGGTCAACAGCACACCGTAATGGGAAATCAGGACGCGATCACGTTGATATAATCTCATTTTATAATGAAATATTCATACCCACCGTAAAGAAGCTGCTTGTTGAACTTGGCCCGACTGGAGCAGCTACGAAAAATAATAGAGTTCCTGAAGCCAACACCAATCACCATGCACAATGTCCAAGCTCGCCCAAGGTATCCCCTTTCCCAAATCTTCCTGATATGTCCCCCAAGAAAGTTTCTGCTGCCCACAACGTCTATGTCTCTCCATTACGGTCTTCGAAGATGGATGCCTTAATTTCACATAGTTCGAAAAGCTATTATGCTTGTGTTGGGGAGAGTACTCGTGCATATCAAAGCCCGTCAAAAGATCTGACGGCTATAAATAACCGCTTGAACGGTACACGGAAGCGCGTTCTTAATTTCGACGATGCTGACATTGATTTGGTTAGTGATTCAATGGTGGCCAACAGTCTCTACCTTCAAAACGGGAGCTGTGCATCCTCATCTGGTGCACCAGTCAAAACTGAACAACCTGACTTCTAA 3069 42.42 MGSPGMEKMEDRKLSVTTANNSLTGVHQQSSETRFRDFCKNELSLEEDMQIQALKLFKETNNLLLTNIQAIGSGVPEESERFWYAFVLYSVKRLSDKNADNTQEGSDLCQILRAAKLNIVDFFKELPQFIVKAGPVLSNLYGTDWEVRIEAKELQANFVHLSLLSKYYKRVYWEFFSTSDANVDKEPGVTSTTGYVSDYHRFGWLLFLALRVHAFSRFKDLVTCTNGLVSILAILIIHVPIRFRDFDILDSQRFVKKGNKGVDLLGSLCSIYDASEEEVKKTMEKANNLIQDILKKKPCLASECSNKNLENLDTDGLIYFEGLMEESSLSSSLDILERDYDDAVRNKVDLDERVFINGEDSLLGSGSLSTGAVNISGIKRKFDSIASPARTITSPLSPLRSPASHANGTLAGANAKIAATPVSTAMTTAKWLRTIISPLSERPSAELERFLASCDRDVTNDVVRRAHIILEAIFPSSTLGERCIAGCLQSSNLMDNIWAEQRRLEALKLYYRVLEAMCRAEAQILHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEDSLPRELRRHLNSLEERLLECMVWEKGSSMYNSLIVARPILATEINRIGLLAEPMPSLDAIAAHINFSGTGMPSLPNSQKHESSVGQNGDIRSPKRLCMDNRSVLVERNSFTSPVKDRLLAFSNLKAKLPPPPLQSAFASPTRPNPGGGGETCAETGINIFFNKITKLAAVRVNGMVERLQLSQQIRENVYCLFQQVLSQKTSLFFNRHIDQIILCCFYGVAKISQLNLTFKEIIYNYRKQPQCKPQVFRSVFVDWSTAHRNGKSGRDHVDIISFYNEIFIPTVKKLLVELGPTGAATKNNRVPEANTNHHAQCPSSPKVSPFPNLPDMSPKKVSAAHNVYVSPLRSSKMDALISHSSKSYYACVGESTRAYQSPSKDLTAINNRLNGTRKRVLNFDDADIDLVSDSMVANSLYLQNGSCASSSGAPVKTEQPDF 1022
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57195864 57202146 - Conep01aG0157000.1 Cone1ag1510 432201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1510 1022 SUPERFAMILY Cyclin-like 743 912 IPR036915 -
Cone1ag1510 1022 CDD CYCLIN_AtRBR_like 745 876 - -
Cone1ag1510 1022 Gene3D - 703 913 - -
Cone1ag1510 1022 FunFam Retinoblastoma-related protein 1 423 611 - -
Cone1ag1510 1022 SUPERFAMILY Cyclin-like 428 623 IPR036915 -
Cone1ag1510 1022 FunFam Retinoblastoma-related protein 1 199 357 - -
Cone1ag1510 1022 Coils Coil 272 296 - -
Cone1ag1510 1022 Gene3D - 423 611 - -
Cone1ag1510 1022 Pfam Retinoblastoma-associated protein A domain 420 621 IPR002720 GO:0005634(InterPro)|GO:0051726(InterPro)
Cone1ag1510 1022 Coils Coil 333 353 - -
Cone1ag1510 1022 SMART RB_A_2 420 621 IPR002720 GO:0005634(InterPro)|GO:0051726(InterPro)
Cone1ag1510 1022 Pfam Domain of unknown function (DUF3452) 103 238 IPR024599 -
Cone1ag1510 1022 SMART DUF3452_2 89 238 IPR024599 -
Cone1ag1510 1022 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 10 1019 IPR028309 GO:0000785(PANTHER)|GO:0000977(PANTHER)|GO:0005667(PANTHER)|GO:0006357(InterPro)|GO:0030154(PANTHER)|GO:0051726(InterPro)|GO:2000134(PANTHER)
Cone1ag1510 1022 FunFam Retinoblastoma-related protein 1 695 905 - -
Cone1ag1510 1022 Pfam Retinoblastoma-associated protein B domain 745 872 IPR002719 GO:0005634(InterPro)|GO:0051726(InterPro)
Cone1ag1510 1022 Gene3D - 199 357 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1510 Cone-Chr1:57195864 Cone5ag0502 Cone-Chr5:2114767 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45522 PF00155 Aminotran_1_2 2.10E-82 CL0061 Cone TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1510 K04681 - csv:101219810 1606.27