Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1521 ATGTCAAATTCGGAAGGAGTTAAAAACAACGGCGCCATAATCGACCCCCAGCGGCAGCCTCCCGGCACCCTTACTGTGAAGAAGCCTCCCTCTAAGGACCGTCACAGCAAGGTCGACGGCCGTGGCCGCCGTATCCGCATGCCCATCATCTGCGCCGCACGTGTCTTCCAGCTCACTCGCGAGCTTGGCCACAAGTCTGATGGCCAGACTATCGAGTGGCTCCTCCGCCAAGCAGAGCCTTCCATCATAGCTGCCACCGGTACTGGTACCACTCCTGCCAGCTTCTCCTCTGTCTCTGCCTCCGTTCGTGCGGCCGGCGTCTCTACCTCTCTCTCTCCCTCCTCCACTACCTCTTCTCTATCCCTCCTCTCTCGACCACAAGCTTTGCTCGGCCCCACGCCCTTCATCCTCGGAAAGCGCGTGCGATCTGACGACGACGGAGGCAGTGGAGCCAAGGACGAAACCGTCTCCGTTGCTAACGCAGTGGGTTCCATTGTTGGTCCCTCGGCCACTGGCGGTTACTGGGCCATACCCACCAGACCTGACTTCGGCCAGGTCTGGAGTTTCGCCGCGCCGGAGATGGTGGTTCAGCCGGCTGTCTCTCAACAGGCGTCGCTATTTGTTCAGCAGCAGCAGACAGGGGAGGCCTCCGCGGCGAGGGTGGGGAATTACCTTCCGGGACATCTGAATTTGCTTGCTTCTTTGTCGGGTGGTCCGGGCAGTTCGGGCAGGAGAGAGGATGACACTCGCTGA 753 60.56 MSNSEGVKNNGAIIDPQRQPPGTLTVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSSVSASVRAAGVSTSLSPSSTTSSLSLLSRPQALLGPTPFILGKRVRSDDDGGSGAKDETVSVANAVGSIVGPSATGGYWAIPTRPDFGQVWSFAAPEMVVQPAVSQQASLFVQQQQTGEASAARVGNYLPGHLNLLASLSGGPGSSGRREDDTR 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57261889 57263992 + Conep01aG0158100.1 Cone1ag1521 432212

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1521 250 MobiDBLite consensus disorder prediction 28 43 - -
Cone1ag1521 250 ProSiteProfiles TCP domain profile. 31 85 IPR017887 -
Cone1ag1521 250 Pfam TCP family transcription factor 31 112 IPR017887 -
Cone1ag1521 250 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 26 184 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cone1ag1521 250 MobiDBLite consensus disorder prediction 1 43 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1521 K16221 - - cit:102623358 306.219
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0952 Cone-Chr19:7261477 Cone1ag1521 Cone-Chr1:57261889 3.49E-35 dispersed
Cone1ag1521 Cone-Chr1:57261889 Cone2ag0034 Cone-Chr2:186883 1.15E-30 dispersed
Cone1ag1521 Cone-Chr1:57261889 Cone5ag0514 Cone-Chr5:2163684 4.33E-147 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone1ag1521 . 29 250 TCP Transcription Factor Family AT5G23280 62.7 3.5e-65 245.7
Cone5ag0514 . 31 254 TCP Transcription Factor Family AT5G23280 61.9 5.0e-64 241.9
Cone14ag0318 . 1 348 TCP Transcription Factor Family AT2G45680 50.8 6.6e-70 261.9
Cone15ag0348 . 71 342 TCP Transcription Factor Family AT2G45680 54.6 1.6e-63 240.7
Cone19ag0075 . 78 175 TCP Transcription Factor Family AT3G47620 88.9 6.8e-41 166.0
Cone19ag0952 . 67 154 TCP Transcription Factor Family AT3G47620 92.0 4.9e-39 159.8
Cone19ag0075 . 78 172 TCP Transcription Factor Family AT1G69690 87.4 3.6e-38 156.4
Cone2ag0034 . 75 304 TCP Transcription Factor Family AT3G27010 60.4 5.9e-62 235.3
Cone16ag1006 . 32 266 TCP Transcription Factor Family AT3G27010 60.5 7.7e-62 235.0
Cone18ag1441 . 1 291 TCP Transcription Factor Family AT3G27010 53.2 1.2e-54 211.1
Cone11ag0038 . 5 260 TCP Transcription Factor Family AT3G27010 52.3 1.1e-52 204.5
Cone5ag0514 . 1 252 TCP Transcription Factor Family AT5G08330 55.4 4.8e-64 241.9
Cone1ag1521 . 1 248 TCP Transcription Factor Family AT5G08330 55.3 3.1e-63 239.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001822 4 2 1 2 2 2 4 2 2 1 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 3 2 1 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45523 PF01486 K-box 4.20E-26 No_clan Cone TF