Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1521 ATGTCAAATTCGGAAGGAGTTAAAAACAACGGCGCCATAATCGACCCCCAGCGGCAGCCTCCCGGCACCCTTACTGTGAAGAAGCCTCCCTCTAAGGACCGTCACAGCAAGGTCGACGGCCGTGGCCGCCGTATCCGCATGCCCATCATCTGCGCCGCACGTGTCTTCCAGCTCACTCGCGAGCTTGGCCACAAGTCTGATGGCCAGACTATCGAGTGGCTCCTCCGCCAAGCAGAGCCTTCCATCATAGCTGCCACCGGTACTGGTACCACTCCTGCCAGCTTCTCCTCTGTCTCTGCCTCCGTTCGTGCGGCCGGCGTCTCTACCTCTCTCTCTCCCTCCTCCACTACCTCTTCTCTATCCCTCCTCTCTCGACCACAAGCTTTGCTCGGCCCCACGCCCTTCATCCTCGGAAAGCGCGTGCGATCTGACGACGACGGAGGCAGTGGAGCCAAGGACGAAACCGTCTCCGTTGCTAACGCAGTGGGTTCCATTGTTGGTCCCTCGGCCACTGGCGGTTACTGGGCCATACCCACCAGACCTGACTTCGGCCAGGTCTGGAGTTTCGCCGCGCCGGAGATGGTGGTTCAGCCGGCTGTCTCTCAACAGGCGTCGCTATTTGTTCAGCAGCAGCAGACAGGGGAGGCCTCCGCGGCGAGGGTGGGGAATTACCTTCCGGGACATCTGAATTTGCTTGCTTCTTTGTCGGGTGGTCCGGGCAGTTCGGGCAGGAGAGAGGATGACACTCGCTGA 753 60.56 MSNSEGVKNNGAIIDPQRQPPGTLTVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSSVSASVRAAGVSTSLSPSSTTSSLSLLSRPQALLGPTPFILGKRVRSDDDGGSGAKDETVSVANAVGSIVGPSATGGYWAIPTRPDFGQVWSFAAPEMVVQPAVSQQASLFVQQQQTGEASAARVGNYLPGHLNLLASLSGGPGSSGRREDDTR 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57261889 57263992 + Conep01aG0158100.1 Cone1ag1521 432212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1521 250 MobiDBLite consensus disorder prediction 28 43 - -
Cone1ag1521 250 ProSiteProfiles TCP domain profile. 31 85 IPR017887 -
Cone1ag1521 250 Pfam TCP family transcription factor 31 112 IPR017887 -
Cone1ag1521 250 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 26 184 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cone1ag1521 250 MobiDBLite consensus disorder prediction 1 43 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0952 Cone-Chr19:7261477 Cone1ag1521 Cone-Chr1:57261889 3.49E-35 dispersed
Cone1ag1521 Cone-Chr1:57261889 Cone2ag0034 Cone-Chr2:186883 1.15E-30 dispersed
Cone1ag1521 Cone-Chr1:57261889 Cone5ag0514 Cone-Chr5:2163684 4.33E-147 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45523 PF01486 K-box 4.20E-26 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1521 K16221 - cit:102623358 306.219