Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1535 ATGTCGAATTTTGTCAAACCTGAGAATGCTCTGAAACGAGCTGAAGAGTTGATCAATATCGGACAGAAGCAAGATGCCCTGCAAGCGCTTCATGATCTTATTACCTCAAAGAAATACCGAGCATGGCAAAAGCCGCTTGAAAAGATCATGTTTAAATATGTAGAGCTTTGCGTGGACATGAGGAGAGGAAGGTTTGCCAAGGATGGTTTGATTCAATATCGGATTGTTTGCCAGCAAGTCAATGTTTCTTCTCTGGAGGAGGTGATCAAGCATTTTATGCATCTCTCCACTGAGAAAGCTGAGCAGGCACGTAGTAAGGCACAGGCCCTGGAAGAGGCCCTAGATGTTGATGACTTGGAAGCAGATCAAAGGCCAGAAGATCTGATGCTTTCTTATGTTAGTGGAGAGAAGGGAAAGGAGCGGTCTGATCGTGAACTTGTCACCCCTTGGTTCAAGTTTCTATGGGAGACATACAGAACAGTGCTTGAAATATTACGTAACAATTCAAAACTGGAGGCACTTTATGCGATGACTGCTCATCGGGCCTTCCAGTTCTGCAAGCAGTACAAAAGAACAACAGAATTTCGGAGGCTATGTGAAATTATCAGAAATCATCTTTCAAATCTTAATAAATATAGGGATCAAAGAGATAGGCCTGACCTATCAGCCCCGGAGAGCTTGCAACTATATCTTGACACAAGATGTGAACAGTTAAAGGTTGCTACAGAACTTGAACTCTGGCAGGAAGCTTTCCGCTCAGTTGAAGATATTCATGGTTTGATGTGCATGGTTAAAAAAACGCCCAAGGCATCCTTGATGGTGGTTTATTATGCCAAGTTAACTGAAATTTTCTGGATCTCATCTAGCCATCTTTATCATGCTTATGCATGGCTCAAGCTTTTCACTCTACAGAAAAGCTTCAATAAGAATTTAAGCCAAAAGGATTTGCAATTAATAGCATCATCTGTTGTTTTAGCTGCTCTATCAGTGCCTCCCTATGACCATAAACACGGTGCATTGCATTTGGAAGTTGAAAACGAAAGAGAGCGAAACTCGAGAATGGAAAACCTTATAGGATTCAATCTTGACCCTAAACTTGACAATAGAGAAGTGCTTTTGCGATCAAACCTTCTATCTGAACTGGTTTCAAAAGGAGTGCTTAGCTGTGCAACCCAGGAAGTGAAAGATATATACCATCTTATAGAGCATGAATTCTTGCCTCTTGATCTCACATCAAAGCTGCAGCCTTCATTGAACAAAATCTCGAAGGTTGGGGGGAAGGTGGCATCAGCCTCGTCTCTCCCGGAAGTACAACTTTCCCAGTATATTCCTGCCCTGGAAAAGCTTGGAACCCTGAGGTTGCTTCAGCAGGTGTCTCGGGTTTACCAGACAATGAAAATTGAGAGTTTATCCAAGATGATCCCCTTTTTTGATTTTCCCATTTTGGAAAAGATTTCTGTGGATGCTGTGAAGCAAAATTTCATAGCCATGAAAGTTGACCACAGTAAGGGCGTTGTGTTATTTGGAAATTTGGGTGTTGAATCTGATGGTTTACGGGATCACCTAGCCACTCTTGCTGCATCACTGAATAAAGCAAGGTCTATGATCTATCCTTCAGTACCAAAAGCATCAAAAATAGGTGAACTGTTGCCTGGTTTAGCAGATACTGTGGATAAAGAACACAAGAGACTTCTTGCTCGAAAATCAATTATAGAGAAAAGGAAGGAGGAACAGGAGCGCCAACTCTTGGAAATGGAACGTGAGGAGGAATCAAGAAGACTGAGATTACAGAAGATAACTGAAGAGGCAGAGCAAAAGAGACTTGCATCTGAGTATGAGCAAAGGAAAAATCAAAGGATTCTGAGAGAAATAGAAGAGCGTGAACTTGAAGAAGCACAAGCTTTGCTTCAGGCGCGTGGCACTAAAAAGAAGGGAAAGAAGCCAATCCTAGAAGGCGAAAAGATGACAAAGCAAACTTTGATGAAACTGGCACTCAATGAGCAGCTAAGAGAGAGGCAAGATATGGAGAAGAAATTACAAAAACTAGCTAAAACCATGGATTATCTAGAGAGAGCGAAAAGAGAAGAATCAGCACCCTTAATTGAAGCTGCATTTCAACAACGTATAGTTGAAGAGAGAGTGCTACATGAACGGGAGCAACAGCTTGAGGTTGAGCGAAGCAAGCAGCGCCATGAAGGAGACCTCAAGGAGAAGATTCGCTTGTCCCGAATGATTGATTATAAGATGATATTCCAGGAAAGAGTGATGAGCCGTCGCCAAGAAGAGTTTGATCGACATAGAGCAGAGAGAGAGGAGCAGGTTAAGCAAATGATTCAAGCTAGGAGACTGGATAGGGAGATTAAGAGGAAGAAGATATATTATGTGAGAACTCAAGAAGAAATACTTGGAATCATGCAAGAAGCGGAGGAAGCTCGCAAGCGTGAAGAGGCTGAGAAACGTAGAAAGGAAGAGGCCGAACGCAAGGCTAAATTGGATGAGATCGCTGAAAAGCAGAGGCAGAGAGAACAGGAACTAGAAGAAAAAGAAAGGCTCAGAAAAGAAGCTTTGTTGGGGAGACCTGCTGAGGTGCCTTCTAGACTTTCTGAGACTGTTCCTCCTCGCCCTTCAGATCCCGTAGCTGCTGCTGCTGCTGCCGCCGCCGCCACTTCTGCTGGTCCCACCTCTACCCCATCCACTGGAAAATACGTGCCTAGGCACCTTCGTGAGAAGGCTTCCCAGCCACCACATGTGGAATCTGACCGGTGGGGCAGTAGGCTGGATGATCGGCCATCCCAATTAGGTGATAGATGGCGCAATGGCGGCGAAGCCCATAGTAGACCATCATATGGTGCTGGGGGTCCCACTAGACCAACATGGTCCTCATCCAGGCCACATGGCGACCGCTGA 2907 44.27 MSNFVKPENALKRAEELINIGQKQDALQALHDLITSKKYRAWQKPLEKIMFKYVELCVDMRRGRFAKDGLIQYRIVCQQVNVSSLEEVIKHFMHLSTEKAEQARSKAQALEEALDVDDLEADQRPEDLMLSYVSGEKGKERSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLSNLNKYRDQRDRPDLSAPESLQLYLDTRCEQLKVATELELWQEAFRSVEDIHGLMCMVKKTPKASLMVVYYAKLTEIFWISSSHLYHAYAWLKLFTLQKSFNKNLSQKDLQLIASSVVLAALSVPPYDHKHGALHLEVENERERNSRMENLIGFNLDPKLDNREVLLRSNLLSELVSKGVLSCATQEVKDIYHLIEHEFLPLDLTSKLQPSLNKISKVGGKVASASSLPEVQLSQYIPALEKLGTLRLLQQVSRVYQTMKIESLSKMIPFFDFPILEKISVDAVKQNFIAMKVDHSKGVVLFGNLGVESDGLRDHLATLAASLNKARSMIYPSVPKASKIGELLPGLADTVDKEHKRLLARKSIIEKRKEEQERQLLEMEREEESRRLRLQKITEEAEQKRLASEYEQRKNQRILREIEERELEEAQALLQARGTKKKGKKPILEGEKMTKQTLMKLALNEQLRERQDMEKKLQKLAKTMDYLERAKREESAPLIEAAFQQRIVEERVLHEREQQLEVERSKQRHEGDLKEKIRLSRMIDYKMIFQERVMSRRQEEFDRHRAEREEQVKQMIQARRLDREIKRKKIYYVRTQEEILGIMQEAEEARKREEAEKRRKEEAERKAKLDEIAEKQRQREQELEEKERLRKEALLGRPAEVPSRLSETVPPRPSDPVAAAAAAAAATSAGPTSTPSTGKYVPRHLREKASQPPHVESDRWGSRLDDRPSQLGDRWRNGGEAHSRPSYGAGGPTRPTWSSSRPHGDR 968
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57325335 57330826 + Conep01aG0159600.1 Cone1ag1535 432226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1535 968 FunFam Eukaryotic translation initiation factor 3 subunit A 217 268 - -
Cone1ag1535 968 Coils Coil 93 120 - -
Cone1ag1535 968 Pfam PCI domain 437 508 IPR000717 -
Cone1ag1535 968 FunFam Eukaryotic translation initiation factor 3 subunit A 268 342 - -
Cone1ag1535 968 MobiDBLite consensus disorder prediction 818 859 - -
Cone1ag1535 968 Pfam eIF3a, PCI domain, TPR-like region 8 407 IPR054711 -
Cone1ag1535 968 ProSiteProfiles PCI domain profile. 316 513 IPR000717 -
Cone1ag1535 968 Coils Coil 615 635 - -
Cone1ag1535 968 Coils Coil 561 595 - -
Cone1ag1535 968 Gene3D - 363 494 - -
Cone1ag1535 968 Gene3D - 268 342 - -
Cone1ag1535 968 Hamap Eukaryotic translation initiation factor 3 subunit A [EIF3A]. 1 936 IPR027512 GO:0005852(InterPro)
Cone1ag1535 968 Gene3D UVR domain 217 267 - -
Cone1ag1535 968 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 1 931 IPR027512 GO:0001732(PANTHER)|GO:0002188(PANTHER)|GO:0003729(PANTHER)|GO:0003743(PANTHER)|GO:0005852(InterPro)|GO:0043614(PANTHER)|GO:0071540(PANTHER)|GO:0071541(PANTHER)
Cone1ag1535 968 MobiDBLite consensus disorder prediction 818 968 - -
Cone1ag1535 968 MobiDBLite consensus disorder prediction 903 942 - -
Cone1ag1535 968 Coils Coil 794 854 - -
Cone1ag1535 968 FunFam Eukaryotic translation initiation factor 3 subunit A 352 494 - -
Cone1ag1535 968 Coils Coil 665 695 - -
Cone1ag1535 968 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 441 532 IPR000717 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0153 Cone-Chr11:718675 Cone1ag1535 Cone-Chr1:57325335 0 dispersed
Cone18ag1329 Cone-Chr18:9201622 Cone1ag1535 Cone-Chr1:57325335 0 dispersed
Cone1ag1535 Cone-Chr1:57325335 Cone5ag0058 Cone-Chr5:296555 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1535 K03254 - vvi:100244162 1354.35