Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1547 ATGGCTCACACCAGCAACAATGCCGCTGGAGTTGATAACACGTTCAGAAGGAAATTCGATCGGGAGGAGTATTTAGAACGCGCTCGCGAGCGTGAAAAGCAGGAATCTGAGCGGTTCAAGCACAAGTCAAAAGGGCCACCAGTTCAAAGGAAGCCCCTAAAACACAGGGATTATGAAGTAGACCTTGAATCTCGCTTGGGTAAAACTCAGGTTGTTACTCCAGTGGCACCTCTAAGCCAACAGGCTGGCTACTATTGTTCAGTTTGTGAGTGTGTAGTTAAGGATTCAGCAAACTACTTGGATCATATCAATGGAAAGAAACATCAGAGAGCTCTGGGTATGTCTATGCGAGTAGAACGTGCATCTCTTCAACAGGTGCAGGAGCGCTTTGAAAATCTCAAGAAGAGAAAAACTCCTGGTAGCTTTACAGAACAAGATCTTGAGGAGCGGATCATAAAACAGCAGCAAGAGGAGGAGGAACGTAAGCGCCTGCATCGAGAAAGGAAGAAGGAGAAAAAGAAGGAGAAGGCAGTAGCAGAGGAACCTGAAATAGATCCCGAAGTTGCAGAAATGATGGGATTTGGTGGTTTTCGATCGTCAAAGAAATGA 609 45.81 MAHTSNNAAGVDNTFRRKFDREEYLERAREREKQESERFKHKSKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLQQVQERFENLKKRKTPGSFTEQDLEERIIKQQQEEEERKRLHRERKKEKKKEKAVAEEPEIDPEVAEMMGFGGFRSSKK 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57372776 57375008 + Conep01aG0160800.1 Cone1ag1547 432238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1547 202 Pfam Zinc-finger of C2H2 type 84 108 IPR013087 -
Cone1ag1547 202 SMART ZnF_U1_5 81 115 IPR003604 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone1ag1547 202 MobiDBLite consensus disorder prediction 156 202 - -
Cone1ag1547 202 PANTHER ZINC FINGER MATRIN-TYPE PROTEIN 2 8 202 IPR040107 GO:0000398(PANTHER)|GO:0000398(InterPro)|GO:0005681(InterPro)|GO:0046540(PANTHER)
Cone1ag1547 202 MobiDBLite consensus disorder prediction 26 43 - -
Cone1ag1547 202 SUPERFAMILY beta-beta-alpha zinc fingers 79 121 IPR036236 -
Cone1ag1547 202 Gene3D Classic Zinc Finger 78 116 - -
Cone1ag1547 202 MobiDBLite consensus disorder prediction 26 54 - -
Cone1ag1547 202 FunFam zinc finger matrin-type protein 2-like 78 116 - -
Cone1ag1547 202 Coils Coil 116 136 - -
Cone1ag1547 202 Coils Coil 147 175 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1547 Cone-Chr1:57372776 Cone5ag0070 Cone-Chr5:346906 8.95E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45525 PF00076 RRM_1 3.00E-14 CL0221 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1547 K12848 - csv:101206387 310.457