Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone1ag1557 | ATGAATTTGGAAACGTCAGAGACGATGCAGCGAAAGAAGAGTTGCAAAATCACCACCGAAGAAGGTGAAACAACTTCGAATCACAGGTCTCACTTCAGAAATGGAGAAACAAGACGGTGGAGAACAGAGGTGGAGCAACAGATCTACTCCTCGAACCTCTTCGAGGCTATTCGTCGAGTCCGTCGGGACTCTTCGACGCCGTTGAAGTCTCCGAATGCCGGAAGAAAAGTCCGGGAGACAGCCGATCGAATCCTAGCAGCCGCAGCCAAGGGAAGGACACGATGGAGCAGAGCGATCCTCACAAGTGGTATAGGTCTGAAGCTCAAGAAGCACAAGAAGTCAAAACAAGTGAAGAAGCCAACGATCAGGTGCGAGAAGAGAAAATTACCGGCGGTGGAGAGGAAACTCCGAATTCTCGGCCGATTGGTTCCTGGTAGCCGGAAGCTCTCTTTCCCGAACCTTCTAGATGAAGCCACCGATTACATAGCGGCTCTAGAGATGCAGGTTCGAGCCATGACAGCTCTCGCTGAGCTTCTCACCGGCACGTCGGCCGGAAATCGAACTCTTGTAGCTGACTAG | 579 | 51.81 | MNLETSETMQRKKSCKITTEEGETTSNHRSHFRNGETRRWRTEVEQQIYSSNLFEAIRRVRRDSSTPLKSPNAGRKVRETADRILAAAAKGRTRWSRAILTSGIGLKLKKHKKSKQVKKPTIRCEKRKLPAVERKLRILGRLVPGSRKLSFPNLLDEATDYIAALEMQVRAMTALAELLTGTSAGNRTLVAD | 192 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 57413133 | 57413776 | + | Conep01aG0161800.1 | Cone1ag1557 | 432248 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone1ag1557 | 192 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 115 | 181 | IPR036638 | GO:0046983(InterPro) | |
| Cone1ag1557 | 192 | CDD | bHLH_AtIBH1_like | 123 | 176 | IPR044549 | GO:0006355(InterPro) | |
| Cone1ag1557 | 192 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 116 | 165 | IPR011598 | GO:0046983(InterPro) | |
| Cone1ag1557 | 192 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
| Cone1ag1557 | 192 | MobiDBLite | consensus disorder prediction | 9 | 33 | - | - | |
| Cone1ag1557 | 192 | PANTHER | TRANSCRIPTION FACTOR IBH1-LIKE 1 | 38 | 179 | IPR044660 | GO:0006355(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone14ag0710 | Cone-Chr14:3874108 | Cone1ag1557 | Cone-Chr1:57413133 | 2.95E-43 | dispersed | |
| Cone1ag1557 | Cone-Chr1:57413133 | Cone7ag0095 | Cone-Chr7:417925 | 1.77E-38 | dispersed | |
| Cone1ag1557 | Cone-Chr1:57413133 | Cone10ag0823 | Cone-Chr10:4186969 | 3.07E-55 | wgd | |
| Cone1ag1557 | Cone-Chr1:57413133 | Cone15ag0723 | Cone-Chr15:4086223 | 1.39E-44 | wgd | |
| Cone1ag1557 | Cone-Chr1:57413133 | Cone3ag0849 | Cone-Chr3:4369602 | 3.31E-57 | wgd | |
| Cone1ag1557 | Cone-Chr1:57413133 | Cone5ag0081 | Cone-Chr5:396828 | 2.14E-104 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone1ag1557 | - | - | - | 0.0 |