Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1578 ATGGCGACAGATCTTAATGCTGAATTATCCAAGACAACTGGAGTTTTCGGTCTTAAGGTATGGGAAGTGATCGGAATTGCTGTTGGGATATTCATAGTGGTTATCCTTTCCATCCTGTCATTATGTCTTACTTCAAGAGAGAAATCAAAGCAAGCTAGGAGGGCTACTATGCTTTCCCGTAGTCAAATCCCCACAGTATCCAAGGAAATCAAAGAAGTTAAAATCGAGCAATTATCAACAGACGAATTTGTTCCTCGCGACGGAATTATTCTCACCATTCATGATAAATCCGGTGAAAAAGATTCTGATAAGGATCTGGTCCACCTAGGTTTGGGAAATGCAAAAAATGGAGACAGTGGAACAAACCAGTCCGGGTCATTTCATAATTTGGATAAAGATGGAGGGTATCATTCTGGAGAAGAAGGTAGTTCTGGGACTGTTACTGTGTATAAACCTTCTTCACATCCGATAACTGCACCATCCCCCTTATCAGGCCTGCCCGAGTTTTCTCATATGGGATGGGGTCATTGGTTTACTCTACGGGATCTTGAGCTTGCAACCAACCGCTTTTCGAAAGAGAATATTATTGGGGAAGGCGGTTATGGAGTTGTTTATCAGGGACGTTTGATTAATGAAACACCAGTTGCTGTTAAAAAGCTTCTCAATAATCTGGGCCAAGCTGAGAAAGAATTTAGAGTAGAAGTTGATGCAATTGGTCATGTCCGTCATAAGAATTTGGTTCGGCTTCTGGGATATTGCATTGAAGGGACTCATAGGATGTTGGTCTATGAGTTTGTGAACAATGGAAACTTAGAGCAATGGCTCCATGGAGCTATGCAGCAACATGGATATCTCACTTGGGAGGCCAGGATGAAGGTTCTTCTCGGCACAGCAAAAGCTCTTGCTTACTTGCATGAAGCAATCGAGCCTAAAGTGGTGCACCGTGACATTAAATCCAGCAATATATTGATTGATGAAGACTTCAATGCGAAGGTATCCGACTTTGGTTTGGCAAAGTTGCTTGGTGCTGGAACTAGTCACGTCAATACTCGAGTCATGGGAACCTTTGGATATGTGGCTCCTGAATATGCCAACACTGGACTTCTGAATGAGAAGAGTGATATCTATAGCTTTGGTGTTTTGCTCTTAGAAGCAATTACTGGACGAGATCCTGTTGATTATGGCCGTCCAGCCCAAGAGGTAAATCTGGTAGATTGGCTGAAAATGATGGTTGGAAGTAGGCGCTCGGAAGAAGTGGTGGACCCAAATATGGAAGTGAGGCCATCTACTAGAGCCTTAAAACGAGCCCTTTTGACCGCTTTGAGGTGCGTTGACCCAGATTCTGGAAAGAGACCAAGGATGAGCCAAGTTGTCCGAATGCTCGAGTCCGAAGAGTACCCAATACAACGTGAGGATCGGAGGCACAGAAGAAACCAGGGAGGAGGTAGCATTTCTGATACAGATCAAAGTGAAAATCCCGGTTCGAGATCTGAGAGCAGACGTGACCATCGGGTTTGA 1518 44.14 MATDLNAELSKTTGVFGLKVWEVIGIAVGIFIVVILSILSLCLTSREKSKQARRATMLSRSQIPTVSKEIKEVKIEQLSTDEFVPRDGIILTIHDKSGEKDSDKDLVHLGLGNAKNGDSGTNQSGSFHNLDKDGGYHSGEEGSSGTVTVYKPSSHPITAPSPLSGLPEFSHMGWGHWFTLRDLELATNRFSKENIIGEGGYGVVYQGRLINETPVAVKKLLNNLGQAEKEFRVEVDAIGHVRHKNLVRLLGYCIEGTHRMLVYEFVNNGNLEQWLHGAMQQHGYLTWEARMKVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDEDFNAKVSDFGLAKLLGAGTSHVNTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYGRPAQEVNLVDWLKMMVGSRRSEEVVDPNMEVRPSTRALKRALLTALRCVDPDSGKRPRMSQVVRMLESEEYPIQREDRRHRRNQGGGSISDTDQSENPGSRSESRRDHRV 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57478311 57481177 - Conep01aG0163900.1 Cone1ag1578 432269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1578 505 PANTHER OS01G0323000 PROTEIN 1 482 IPR052232 -
Cone1ag1578 505 MobiDBLite consensus disorder prediction 461 505 - -
Cone1ag1578 505 SMART serkin_6 190 461 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag1578 505 MobiDBLite consensus disorder prediction 464 481 - -
Cone1ag1578 505 Pfam Protein kinase domain 191 459 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag1578 505 FunFam Putative receptor-like serine/threonine-protein kinase 266 477 - -
Cone1ag1578 505 CDD STKc_IRAK 196 462 - -
Cone1ag1578 505 Gene3D Phosphorylase Kinase; domain 1 170 265 - -
Cone1ag1578 505 MobiDBLite consensus disorder prediction 114 153 - -
Cone1ag1578 505 Gene3D Transferase(Phosphotransferase) domain 1 266 479 - -
Cone1ag1578 505 ProSitePatterns Protein kinases ATP-binding region signature. 196 219 IPR017441 GO:0005524(InterPro)
Cone1ag1578 505 SUPERFAMILY Protein kinase-like (PK-like) 174 466 IPR011009 -
Cone1ag1578 505 ProSiteProfiles Protein kinase domain profile. 190 454 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag1578 505 FunFam Putative receptor-like protein kinase 172 265 - -
Cone1ag1578 505 ProSitePatterns Serine/Threonine protein kinases active-site signature. 312 324 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone1ag1578 505 MobiDBLite consensus disorder prediction 115 129 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1578 Cone-Chr1:57478311 Cone3ag1487 Cone-Chr3:33526021 2.26E-224 dispersed
Cone1ag1578 Cone-Chr1:57478311 Cone10ag0838 Cone-Chr10:4250465 4.21E-257 wgd
Cone1ag1578 Cone-Chr1:57478311 Cone15ag0686 Cone-Chr15:3682084 4.54E-47 wgd
Cone1ag1578 Cone-Chr1:57478311 Cone5ag0098 Cone-Chr5:454772 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82516 PF00241 Cofilin_ADF 1.10E-35 CL0092 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1578 - - - 0.0