Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1616 ATGTCATCGCAAGACATAAACGGGCTCAACACTCCGCTGGTGTTCCAAGAAGAAACCTTGCGGTTCAATTGCGGTCCACCTCAGCGCCGAGTCGGCATCTCGGATCCTAAAACCCGTGAGCTCAGTGGTTTCATGGACGAGAAGCTCTTTGCTGTGCACCGCGACCGTTTCTTCGCCTCTCCGGGAACGGACTTCCGACGGAATGTTTTTGGTGAAGGACCGGACCGTTCGGAGAGTAGAAATTGGAATGGAAATGGGAGTAATTCCACACCTAGATGTAAAGGATCAGAGGAAGACGAAGAAGATGAAGATGAAGACGAGGAAGACGACGATGACGATGGTGACGACGATGAAGTTGATGATAAAGGCGAAGGTGATGTCGAGAGACTTGTTGCCGTTGATGAAGGAAACAAGAGCAGCCATGACGGAAATAATCATTGTGGTAGCAGTGTACAAAGTGGAGGAGCTAACAAAATTGGAAATGGGAAAGCAAAGCACCATTCTTCTTTTGGTGGGATAGTGATGGTAGGATCCAACAGAGAGGTTCTAATGAAGGATGATGTGGCTGGGCTGTCTGGAAACCACACAGGAACAAGCCCGAGCTCTGACCCGACCGAGAACAATCAGCCGAGAAGACTAGGAGGGAGCTACTCCAATGCGGTTACGATTGCGGAAAATGATGGGGATGTATACTATTCACAGTATTTGCAGGGCAATGAGGGTTCTGCTTCTAGGCAAAAGGAATTAGTTTTGGAAAATGGTTGCGGGTTCAGTGGGAGGAGGGATGTTTCTTATTCCTGTGAATCCGGCGAGTCTTTGAGAGCAATTCTCTCTGACCCTGTAACGGGTGCTCTCATGGATGATGCAGTGATATTATCTTGCGGACACTCCTTTGGAAGTGGCGGAATACAACATGTTCTTAGAACGAAAGTGTGCTACACCTGTTATCAATCAATTTCAGGAGATTCTATTGCTCTAAATCTCTCTCTACGAGCTGCAGTCGAGGCCTTCCGTCGGGAGGAAGAATTACAGTTGTACCGCTCACCGAAAAGGAGAAAGGAGAGATTTGACCAGGACAAAGGTGGTTTTTGTGATTCAATTATCCTGGATGCCAGAGGGAGAGGTGTTCAGTTTCCATTTGCCGTCACGGACCGGGTTATTATAAAGGGGAACAAGAGAACACCACAGCGCTTTGTCGGGCGAGAGGCTGTTGTAACAACACAATGCTTGAATGGATGGTATGTGGTGAAGACAGTTGACAATGCAGAGAGTGTAAAATTGCAGTACCGTTCACTTTCCAAGGTTCCAAATGATCCATCTTCAAAGCCGATGTCAAATAAGACAGCACCAAATTGGCTCTAG 1362 47.5 MSSQDINGLNTPLVFQEETLRFNCGPPQRRVGISDPKTRELSGFMDEKLFAVHRDRFFASPGTDFRRNVFGEGPDRSESRNWNGNGSNSTPRCKGSEEDEEDEDEDEEDDDDDGDDDEVDDKGEGDVERLVAVDEGNKSSHDGNNHCGSSVQSGGANKIGNGKAKHHSSFGGIVMVGSNREVLMKDDVAGLSGNHTGTSPSSDPTENNQPRRLGGSYSNAVTIAENDGDVYYSQYLQGNEGSASRQKELVLENGCGFSGRRDVSYSCESGESLRAILSDPVTGALMDDAVILSCGHSFGSGGIQHVLRTKVCYTCYQSISGDSIALNLSLRAAVEAFRREEELQLYRSPKRRKERFDQDKGGFCDSIILDARGRGVQFPFAVTDRVIIKGNKRTPQRFVGREAVVTTQCLNGWYVVKTVDNAESVKLQYRSLSKVPNDPSSKPMSNKTAPNWL 453
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 57628751 57631592 + Conep01aG0167900.1 Cone1ag1616 432307
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1616 453 ProSiteProfiles U-box domain profile. 272 344 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone1ag1616 453 MobiDBLite consensus disorder prediction 97 123 - -
Cone1ag1616 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 272 344 IPR013083 -
Cone1ag1616 453 MobiDBLite consensus disorder prediction 61 166 - -
Cone1ag1616 453 MobiDBLite consensus disorder prediction 142 157 - -
Cone1ag1616 453 MobiDBLite consensus disorder prediction 433 453 - -
Cone1ag1616 453 MobiDBLite consensus disorder prediction 124 141 - -
Cone1ag1616 453 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 36 448 - -
Cone1ag1616 453 MobiDBLite consensus disorder prediction 189 215 - -
Cone1ag1616 453 MobiDBLite consensus disorder prediction 192 215 - -
Cone1ag1616 453 MobiDBLite consensus disorder prediction 78 92 - -
Cone1ag1616 453 SUPERFAMILY RING/U-box 273 345 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0713 Cone-Chr13:6942720 Cone1ag1616 Cone-Chr1:57628751 6.14E-42 dispersed
Cone19ag0712 Cone-Chr19:5902441 Cone1ag1616 Cone-Chr1:57628751 2.21E-41 dispersed
Cone1ag1616 Cone-Chr1:57628751 Cone5ag0138 Cone-Chr5:598063 1.44E-262 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1616 - - - 0.0