Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1616 ATGTCATCGCAAGACATAAACGGGCTCAACACTCCGCTGGTGTTCCAAGAAGAAACCTTGCGGTTCAATTGCGGTCCACCTCAGCGCCGAGTCGGCATCTCGGATCCTAAAACCCGTGAGCTCAGTGGTTTCATGGACGAGAAGCTCTTTGCTGTGCACCGCGACCGTTTCTTCGCCTCTCCGGGAACGGACTTCCGACGGAATGTTTTTGGTGAAGGACCGGACCGTTCGGAGAGTAGAAATTGGAATGGAAATGGGAGTAATTCCACACCTAGATGTAAAGGATCAGAGGAAGACGAAGAAGATGAAGATGAAGACGAGGAAGACGACGATGACGATGGTGACGACGATGAAGTTGATGATAAAGGCGAAGGTGATGTCGAGAGACTTGTTGCCGTTGATGAAGGAAACAAGAGCAGCCATGACGGAAATAATCATTGTGGTAGCAGTGTACAAAGTGGAGGAGCTAACAAAATTGGAAATGGGAAAGCAAAGCACCATTCTTCTTTTGGTGGGATAGTGATGGTAGGATCCAACAGAGAGGTTCTAATGAAGGATGATGTGGCTGGGCTGTCTGGAAACCACACAGGAACAAGCCCGAGCTCTGACCCGACCGAGAACAATCAGCCGAGAAGACTAGGAGGGAGCTACTCCAATGCGGTTACGATTGCGGAAAATGATGGGGATGTATACTATTCACAGTATTTGCAGGGCAATGAGGGTTCTGCTTCTAGGCAAAAGGAATTAGTTTTGGAAAATGGTTGCGGGTTCAGTGGGAGGAGGGATGTTTCTTATTCCTGTGAATCCGGCGAGTCTTTGAGAGCAATTCTCTCTGACCCTGTAACGGGTGCTCTCATGGATGATGCAGTGATATTATCTTGCGGACACTCCTTTGGAAGTGGCGGAATACAACATGTTCTTAGAACGAAAGTGTGCTACACCTGTTATCAATCAATTTCAGGAGATTCTATTGCTCTAAATCTCTCTCTACGAGCTGCAGTCGAGGCCTTCCGTCGGGAGGAAGAATTACAGTTGTACCGCTCACCGAAAAGGAGAAAGGAGAGATTTGACCAGGACAAAGGTGGTTTTTGTGATTCAATTATCCTGGATGCCAGAGGGAGAGGTGTTCAGTTTCCATTTGCCGTCACGGACCGGGTTATTATAAAGGGGAACAAGAGAACACCACAGCGCTTTGTCGGGCGAGAGGCTGTTGTAACAACACAATGCTTGAATGGATGGTATGTGGTGAAGACAGTTGACAATGCAGAGAGTGTAAAATTGCAGTACCGTTCACTTTCCAAGGTTCCAAATGATCCATCTTCAAAGCCGATGTCAAATAAGACAGCACCAAATTGGCTCTAG 1362 47.5 MSSQDINGLNTPLVFQEETLRFNCGPPQRRVGISDPKTRELSGFMDEKLFAVHRDRFFASPGTDFRRNVFGEGPDRSESRNWNGNGSNSTPRCKGSEEDEEDEDEDEEDDDDDGDDDEVDDKGEGDVERLVAVDEGNKSSHDGNNHCGSSVQSGGANKIGNGKAKHHSSFGGIVMVGSNREVLMKDDVAGLSGNHTGTSPSSDPTENNQPRRLGGSYSNAVTIAENDGDVYYSQYLQGNEGSASRQKELVLENGCGFSGRRDVSYSCESGESLRAILSDPVTGALMDDAVILSCGHSFGSGGIQHVLRTKVCYTCYQSISGDSIALNLSLRAAVEAFRREEELQLYRSPKRRKERFDQDKGGFCDSIILDARGRGVQFPFAVTDRVIIKGNKRTPQRFVGREAVVTTQCLNGWYVVKTVDNAESVKLQYRSLSKVPNDPSSKPMSNKTAPNWL 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57628751 57631592 + Conep01aG0167900.1 Cone1ag1616 432307

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1616 453 ProSiteProfiles U-box domain profile. 272 344 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone1ag1616 453 MobiDBLite consensus disorder prediction 97 123 - -
Cone1ag1616 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 272 344 IPR013083 -
Cone1ag1616 453 MobiDBLite consensus disorder prediction 61 166 - -
Cone1ag1616 453 MobiDBLite consensus disorder prediction 142 157 - -
Cone1ag1616 453 MobiDBLite consensus disorder prediction 433 453 - -
Cone1ag1616 453 MobiDBLite consensus disorder prediction 124 141 - -
Cone1ag1616 453 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 36 448 - -
Cone1ag1616 453 MobiDBLite consensus disorder prediction 189 215 - -
Cone1ag1616 453 MobiDBLite consensus disorder prediction 192 215 - -
Cone1ag1616 453 MobiDBLite consensus disorder prediction 78 92 - -
Cone1ag1616 453 SUPERFAMILY RING/U-box 273 345 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1616 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0713 Cone-Chr13:6942720 Cone1ag1616 Cone-Chr1:57628751 6.14E-42 dispersed
Cone19ag0712 Cone-Chr19:5902441 Cone1ag1616 Cone-Chr1:57628751 2.21E-41 dispersed
Cone1ag1616 Cone-Chr1:57628751 Cone5ag0138 Cone-Chr5:598063 1.44E-262 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g172 . . . . . . . . . . Cma04g01063 Cma04g00104 Car04g00098 . . . . . . . . . . . Cla07g00485 Cam07g0521 Cec07g0574 . Clacu07g0529 Cmu07g0566 Cre07g0899 Cone1ag1616 Cone5ag0138 . . . . Chy10g00311 Cme10g01252 . . . . . . . . . . . . . . . Cpe01g00964 . . . . . . . . . . . . . . . Lsi04g01019 Csa05g00898 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone4ag0052 . 16 723 Plant U-box Gene Family AT5G57035 53.7 1.7e-219 760.0
Cone4ag1867 . 97 502 Plant U-box Gene Family AT5G57035 51.0 8.0e-108 389.0
Cone17ag0006 . 1 219 Plant U-box Gene Family AT5G57035 56.8 3.7e-65 247.3
Cone5ag0138 . 239 472 Plant U-box Gene Family AT5G05230 59.4 6.8e-70 261.9
Cone1ag1616 . 220 453 Plant U-box Gene Family AT5G05230 59.4 8.3e-68 255.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004883 1 1 1 1 1 1 2 1 1 2 1 1 2 2 2 0 1 2 1 1 2 1 1 1 1 1 1 2 4 1 40