Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone1ag1616 | ATGTCATCGCAAGACATAAACGGGCTCAACACTCCGCTGGTGTTCCAAGAAGAAACCTTGCGGTTCAATTGCGGTCCACCTCAGCGCCGAGTCGGCATCTCGGATCCTAAAACCCGTGAGCTCAGTGGTTTCATGGACGAGAAGCTCTTTGCTGTGCACCGCGACCGTTTCTTCGCCTCTCCGGGAACGGACTTCCGACGGAATGTTTTTGGTGAAGGACCGGACCGTTCGGAGAGTAGAAATTGGAATGGAAATGGGAGTAATTCCACACCTAGATGTAAAGGATCAGAGGAAGACGAAGAAGATGAAGATGAAGACGAGGAAGACGACGATGACGATGGTGACGACGATGAAGTTGATGATAAAGGCGAAGGTGATGTCGAGAGACTTGTTGCCGTTGATGAAGGAAACAAGAGCAGCCATGACGGAAATAATCATTGTGGTAGCAGTGTACAAAGTGGAGGAGCTAACAAAATTGGAAATGGGAAAGCAAAGCACCATTCTTCTTTTGGTGGGATAGTGATGGTAGGATCCAACAGAGAGGTTCTAATGAAGGATGATGTGGCTGGGCTGTCTGGAAACCACACAGGAACAAGCCCGAGCTCTGACCCGACCGAGAACAATCAGCCGAGAAGACTAGGAGGGAGCTACTCCAATGCGGTTACGATTGCGGAAAATGATGGGGATGTATACTATTCACAGTATTTGCAGGGCAATGAGGGTTCTGCTTCTAGGCAAAAGGAATTAGTTTTGGAAAATGGTTGCGGGTTCAGTGGGAGGAGGGATGTTTCTTATTCCTGTGAATCCGGCGAGTCTTTGAGAGCAATTCTCTCTGACCCTGTAACGGGTGCTCTCATGGATGATGCAGTGATATTATCTTGCGGACACTCCTTTGGAAGTGGCGGAATACAACATGTTCTTAGAACGAAAGTGTGCTACACCTGTTATCAATCAATTTCAGGAGATTCTATTGCTCTAAATCTCTCTCTACGAGCTGCAGTCGAGGCCTTCCGTCGGGAGGAAGAATTACAGTTGTACCGCTCACCGAAAAGGAGAAAGGAGAGATTTGACCAGGACAAAGGTGGTTTTTGTGATTCAATTATCCTGGATGCCAGAGGGAGAGGTGTTCAGTTTCCATTTGCCGTCACGGACCGGGTTATTATAAAGGGGAACAAGAGAACACCACAGCGCTTTGTCGGGCGAGAGGCTGTTGTAACAACACAATGCTTGAATGGATGGTATGTGGTGAAGACAGTTGACAATGCAGAGAGTGTAAAATTGCAGTACCGTTCACTTTCCAAGGTTCCAAATGATCCATCTTCAAAGCCGATGTCAAATAAGACAGCACCAAATTGGCTCTAG | 1362 | 47.5 | MSSQDINGLNTPLVFQEETLRFNCGPPQRRVGISDPKTRELSGFMDEKLFAVHRDRFFASPGTDFRRNVFGEGPDRSESRNWNGNGSNSTPRCKGSEEDEEDEDEDEEDDDDDGDDDEVDDKGEGDVERLVAVDEGNKSSHDGNNHCGSSVQSGGANKIGNGKAKHHSSFGGIVMVGSNREVLMKDDVAGLSGNHTGTSPSSDPTENNQPRRLGGSYSNAVTIAENDGDVYYSQYLQGNEGSASRQKELVLENGCGFSGRRDVSYSCESGESLRAILSDPVTGALMDDAVILSCGHSFGSGGIQHVLRTKVCYTCYQSISGDSIALNLSLRAAVEAFRREEELQLYRSPKRRKERFDQDKGGFCDSIILDARGRGVQFPFAVTDRVIIKGNKRTPQRFVGREAVVTTQCLNGWYVVKTVDNAESVKLQYRSLSKVPNDPSSKPMSNKTAPNWL | 453 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 57628751 | 57631592 | + | Conep01aG0167900.1 | Cone1ag1616 | 432307 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone1ag1616 | 453 | ProSiteProfiles | U-box domain profile. | 272 | 344 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cone1ag1616 | 453 | MobiDBLite | consensus disorder prediction | 97 | 123 | - | - | |
Cone1ag1616 | 453 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 272 | 344 | IPR013083 | - | |
Cone1ag1616 | 453 | MobiDBLite | consensus disorder prediction | 61 | 166 | - | - | |
Cone1ag1616 | 453 | MobiDBLite | consensus disorder prediction | 142 | 157 | - | - | |
Cone1ag1616 | 453 | MobiDBLite | consensus disorder prediction | 433 | 453 | - | - | |
Cone1ag1616 | 453 | MobiDBLite | consensus disorder prediction | 124 | 141 | - | - | |
Cone1ag1616 | 453 | PANTHER | U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED | 36 | 448 | - | - | |
Cone1ag1616 | 453 | MobiDBLite | consensus disorder prediction | 189 | 215 | - | - | |
Cone1ag1616 | 453 | MobiDBLite | consensus disorder prediction | 192 | 215 | - | - | |
Cone1ag1616 | 453 | MobiDBLite | consensus disorder prediction | 78 | 92 | - | - | |
Cone1ag1616 | 453 | SUPERFAMILY | RING/U-box | 273 | 345 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone13ag0713 | Cone-Chr13:6942720 | Cone1ag1616 | Cone-Chr1:57628751 | 6.14E-42 | dispersed | |
Cone19ag0712 | Cone-Chr19:5902441 | Cone1ag1616 | Cone-Chr1:57628751 | 2.21E-41 | dispersed | |
Cone1ag1616 | Cone-Chr1:57628751 | Cone5ag0138 | Cone-Chr5:598063 | 1.44E-262 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone1ag1616 | - | - | - | 0.0 |