Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1620 ATGGACCACCGATCAGTTCTTCGTCAAACCCGAACCATGCATTCCGAGGTGCTCATCACCGGCGGGCACATTCCGAGGTATATTTCCGGCTGCCTAACGATCTCGATCTGGTATCGGACCCGTTCGATGGCCCATCTGGTACCTTGGGATCTGAGGACGACCTTTTCTCCACCTTCATGGACATTGAGAAGTTTGGATCCAAACTCGACGACGGGACCCTCTGAAACCGACATTGCTGCCGGTACTTCTCAGCCGGACCGCCCTAGGCACCGCCATAGCAATTCTGTTGATGGCTCTCCGCTTTTGGACTCTATAGAGGCTAAGAAGGCCATGGATCCTGATAAGCTCGCCGAGTTATGGATCCTTGATCCCAAGCGAGCCAAAAGGATTTTGGCAAATAGACAGTCTGCTGCTCGTTCAAAAGAGAGGAAAGCCTGCTACATAACAGAGCTTGAGAGAAAAGTTCAAACCCTTCAAACTGAAGCCACCACACTTTCCGCGCAGCTAACTTTGTTCCAGAGAGATACAACAGGTTTGTGTTCCGAAAACACCGAGCTCAAGCTTCGTTTACAAGCCATGGAACAACAAGCCCAATTGCATGATGCTCTAAATGAAGCACTGAAAAAGGAAGTAGAGCAACTCAAGATTGCCACTGGAGAAATATTGACACCCACCGAAACTTTTAATTTCGGAATGCAACATATGCCCTACACCCAGTCATGGTATTCAAATCAGCCACAACACAGCCCACGCGATCCCCAGAACAATCAAAGGCCCGATCATCAAGTTCAAGCATTCCAGTCCAATTTTCCAGGCCCTCATCAGAGCCCACTTTCTGGCTCCCAGTCACACACCTTCTCGGAAATGTTACAGCATGATCCTATCGGGCAGTTGCAGCTGCAGGGACTTGATATTGGTGGAAGAGGCCCCCAAATAATAAAGCCTGAAGGTTCCTCCATTTCCATTAGTGAAAGCAGCAGTACGTTTTGA 990 49.09 MDHRSVLRQTRTMHSEVLITGGHIPRYISGCLTISIWYRTRSMAHLVPWDLRTTFSPPSWTLRSLDPNSTTGPSETDIAAGTSQPDRPRHRHSNSVDGSPLLDSIEAKKAMDPDKLAELWILDPKRAKRILANRQSAARSKERKACYITELERKVQTLQTEATTLSAQLTLFQRDTTGLCSENTELKLRLQAMEQQAQLHDALNEALKKEVEQLKIATGEILTPTETFNFGMQHMPYTQSWYSNQPQHSPRDPQNNQRPDHQVQAFQSNFPGPHQSPLSGSQSHTFSEMLQHDPIGQLQLQGLDIGGRGPQIIKPEGSSISISESSSTF 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57637603 57639909 + Conep01aG0168300.1 Cone1ag1620 432311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1620 329 Coils Coil 190 217 - -
Cone1ag1620 329 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 80 276 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cone1ag1620 329 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 123 186 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag1620 329 FunFam probable transcription factor PosF21 124 177 - -
Cone1ag1620 329 MobiDBLite consensus disorder prediction 60 102 - -
Cone1ag1620 329 CDD bZIP_plant_RF2 126 175 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag1620 329 SMART brlzneu 121 185 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag1620 329 SUPERFAMILY Leucine zipper domain 125 179 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag1620 329 Gene3D - 124 177 - -
Cone1ag1620 329 MobiDBLite consensus disorder prediction 240 260 - -
Cone1ag1620 329 MobiDBLite consensus disorder prediction 60 81 - -
Cone1ag1620 329 Pfam bZIP transcription factor 125 173 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag1620 329 MobiDBLite consensus disorder prediction 301 329 - -
Cone1ag1620 329 Coils Coil 148 168 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1620 Cone-Chr1:57637603 Cone20ag0385 Cone-Chr20:1803649 4.17E-52 dispersed
Cone1ag0784 Cone-Chr1:53851457 Cone1ag1620 Cone-Chr1:57637603 2.20E-31 wgd
Cone1ag1620 Cone-Chr1:57637603 Cone5ag0141 Cone-Chr5:607378 1.45E-152 wgd
Cone1ag1620 Cone-Chr1:57637603 Cone5ag1039 Cone-Chr5:4543506 1.80E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45532 PF02875 Mur_ligase_C 2.20E-12 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1620 - - - 0.0