Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1621 ATGGGGATTGCAATTGCATCATTCTCTTCTCTCACTCTTCTACTCATCCTCCTCAACCTCTGCATTCACACCACTTATGCCAGCTACGGCGAGTGGGAAGCTGCTCATGCCACATTCTACGGCGGTGGTGATGCATCGGGCACAATGGGGGGTGCTTGTGGGTATGGGAATTTGTATGGCCAAGGGTATGGAACAAACACTGCAGCATTGAGCACTGCTCTATTCAACAACGGACTGAGCTGTGGTGCTTGTTATGAGATCACTTGTGCAAGTGATCCAAGGTGGTGTGTTTCTGGGACCATTACAGTTACTGCCACCAATTTCTGCCCGCCTAACTACGCCTTGTCTAATGACAACGGGGGTTGGTGCAATCCTCCTCTTCAGCACTTCGACTTAGCCGAGCCCGCTTTCCTGCAAATCGCACAGTACCGAGCTGGAATTGTCCCCGTCTCTTTCAGAAGGGTCCCATGCATGAAGAAAGGAGGGGTGAGGTTTACAATCAACGGTCACTCCTACTTCAACCTGGTTTTAGTCACAAACGTGGGAGGTGCAGGGGATGTCCATTCAGTGTCGATCAAAGGGTCCAAGACAGAGTGGCGAACTATGTCGAGGAATTGGGGGCAAAACTGGCAGAGCAACTCCTACCTTAATGGGCAGAGTCTCTCTTTCCAAGTGACCACTAGTGATGGTCGGACAATCACAAGCTACGACGTTGCACCGGCGAATTGGCAGTTCGGGCAGACATTTGCGGGCAGCCAATTCTAG 765 51.37 MGIAIASFSSLTLLLILLNLCIHTTYASYGEWEAAHATFYGGGDASGTMGGACGYGNLYGQGYGTNTAALSTALFNNGLSCGACYEITCASDPRWCVSGTITVTATNFCPPNYALSNDNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVSFRRVPCMKKGGVRFTINGHSYFNLVLVTNVGGAGDVHSVSIKGSKTEWRTMSRNWGQNWQSNSYLNGQSLSFQVTTSDGRTITSYDVAPANWQFGQTFAGSQF 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57641927 57642879 + Conep01aG0168400.1 Cone1ag1621 432312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1621 254 SUPERFAMILY Barwin-like endoglucanases 31 180 IPR036908 -
Cone1ag1621 254 FunFam Expansin 162 254 - -
Cone1ag1621 254 Pfam Expansin C-terminal domain 163 240 IPR007117 -
Cone1ag1621 254 Gene3D - 162 254 IPR036749 -
Cone1ag1621 254 PANTHER EXPANSIN-A15 15 254 IPR002963 GO:0009664(InterPro)
Cone1ag1621 254 SUPERFAMILY PHL pollen allergen 159 250 IPR036749 -
Cone1ag1621 254 PRINTS Expansin signature 161 173 IPR002963 GO:0009664(InterPro)
Cone1ag1621 254 PRINTS Expansin signature 173 194 IPR002963 GO:0009664(InterPro)
Cone1ag1621 254 PRINTS Expansin signature 62 76 IPR002963 GO:0009664(InterPro)
Cone1ag1621 254 PRINTS Expansin signature 137 150 IPR002963 GO:0009664(InterPro)
Cone1ag1621 254 PRINTS Expansin signature 101 111 IPR002963 GO:0009664(InterPro)
Cone1ag1621 254 PRINTS Expansin signature 208 229 IPR002963 GO:0009664(InterPro)
Cone1ag1621 254 PRINTS Expansin signature 237 253 IPR002963 GO:0009664(InterPro)
Cone1ag1621 254 PRINTS Expansin signature 120 137 IPR002963 GO:0009664(InterPro)
Cone1ag1621 254 PRINTS Expansin signature 89 100 IPR002963 GO:0009664(InterPro)
Cone1ag1621 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 162 IPR007112 -
Cone1ag1621 254 FunFam Expansin 21 158 - -
Cone1ag1621 254 Gene3D - 18 158 IPR036908 -
Cone1ag1621 254 CDD DPBB_EXPA_N 31 157 - -
Cone1ag1621 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 251 IPR007117 -
Cone1ag1621 254 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576(InterPro)
Cone1ag1621 254 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576(InterPro)
Cone1ag1621 254 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576(InterPro)
Cone1ag1621 254 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576(InterPro)
Cone1ag1621 254 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576(InterPro)
Cone1ag1621 254 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576(InterPro)
Cone1ag1621 254 SMART dpbb_1 67 152 IPR007112 -
Cone1ag1621 254 Pfam Lytic transglycolase 67 152 IPR009009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0763 Cone-Chr11:5439759 Cone1ag1621 Cone-Chr1:57641927 8.80E-159 dispersed
Cone17ag1424 Cone-Chr17:9750694 Cone1ag1621 Cone-Chr1:57641927 9.82E-116 dispersed
Cone19ag0067 Cone-Chr19:419124 Cone1ag1621 Cone-Chr1:57641927 9.72E-144 dispersed
Cone1ag1621 Cone-Chr1:57641927 Cone6ag0576 Cone-Chr6:2820883 3.53E-139 dispersed
Cone10ag1202 Cone-Chr10:8884678 Cone1ag1621 Cone-Chr1:57641927 5.30E-95 transposed
Cone1ag0781 Cone-Chr1:53837989 Cone1ag1621 Cone-Chr1:57641927 9.09E-146 wgd
Cone1ag1621 Cone-Chr1:57641927 Cone18ag0813 Cone-Chr18:5002561 2.46E-114 wgd
Cone1ag1621 Cone-Chr1:57641927 Cone5ag0142 Cone-Chr5:611803 8.79E-182 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1621 - - - 0.0