Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1630 ATGTTAGGCCCGCCTGGTTCCTTAAACACAATAACACCATGCGCTGCCTGTAAGCTCTTAAGAAGAAGATGCGCTCAAGAATGTCCCTTCTCTCCCTACTTCTCCCCTCACGAACCGCACAAATTCGCTTCCGTTCACAAGGTTTTCGGTGCAAGCAACGTTTCCAAAATGCTCATGGAGGTACCGCAAAGTCAAAGGGCCGATGCAGCGAATAGTCTCGTAATCGAGGCGAACGTGAGGCTAAGGGACCCGGTTTATGGATGCATGGGTGCAATTTCAGCTCTGCAGCAACAAGTTCAGGCCTTACAAGCTGAGCTTAACGCAGTAAGGGGTGAGATACTCAAGTACAAGTATAGGGAAGGTAATTTAATTAACATGCCACCTTCTACCACTAGCTGTACTGCTACTACAATTACCACCACAGCTAGTCCTCATTCTCATCATCAAATGGTTAATTTGCTCGGTTCAAATAATTCTGCCTCCGTCGTTTCCGTTGCTGGTCTGCTGCCTCACACGGTGGTTCACCTTCCCCTTCCGCCACAGCCGCCACCACCACCAGAAAATCAGTCTCCACCTCCTTTGCCTCCTACTTCCTCTCCTTCTAATTCTATCTATAGCGCTTCTACTCAACCCTCTAGTGCTGCTGCTACAGATCATCATTACAGTTCCATCTCTAATGACCATGATCATCACCAACATGTTTCCTACTTTGGTTAA 717 47.7 MLGPPGSLNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPQSQRADAANSLVIEANVRLRDPVYGCMGAISALQQQVQALQAELNAVRGEILKYKYREGNLINMPPSTTSCTATTITTTASPHSHHQMVNLLGSNNSASVVSVAGLLPHTVVHLPLPPQPPPPPENQSPPPLPPTSSPSNSIYSASTQPSSAAATDHHYSSISNDHDHHQHVSYFG 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57674187 57674982 + Conep01aG0169300.1 Cone1ag1630 432321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1630 238 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Cone1ag1630 238 Coils Coil 92 112 - -
Cone1ag1630 238 MobiDBLite consensus disorder prediction 200 221 - -
Cone1ag1630 238 MobiDBLite consensus disorder prediction 222 238 - -
Cone1ag1630 238 MobiDBLite consensus disorder prediction 175 199 - -
Cone1ag1630 238 MobiDBLite consensus disorder prediction 174 238 - -
Cone1ag1630 238 Pfam Lateral organ boundaries (LOB) domain 13 109 IPR004883 -
Cone1ag1630 238 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 160 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1630 Cone-Chr1:57674187 Cone8ag1587 Cone-Chr8:11808670 4.27E-50 dispersed
Cone1ag1630 Cone-Chr1:57674187 Cone5ag0152 Cone-Chr5:647674 6.43E-84 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45533 PF14432 DYW_deaminase 9.50E-39 CL0109 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1630 - - - 0.0