Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1640 ATGGAGACGCAAAACCATATTTTGCAGACCTTATGTAAATACCCATTTGACAGCAACAGCTGCGTTTCCGAAGAGAAGAAGGAAAAATGGAAGAAGGTGATTATTTCCCTTCTACTGCTTATTTCGATCATTCAACCTGTTTCCAGCCAGGTTTGGGACGGTGTAATCGTAACCCAAGCAGATTACCAAGCCCTTCAGGCATTCAAGCATGAACTAATCGACCCGAGAGGGTTCTTAAAGAGCTGGAACGATAGCGGTTACGGAGCTTGTTCTGGCGGTTGGGCTGGGATCAAGTGTGCTCAGGGCCAGGTTATAGTTATCCAGCTTCCATGGAAAGGATTAGGCGGTCAAATCTCAGAGAAAATCGGCCAACTTCAAGCACTGCGTAAACTCAGCCTCCATGATAACCTTATTGCCGGAGCAATCCCTTTCTCATTAGGGTTTCTTCCAAACCTAAGAGGAGTTCAACTCTTCAACAATCGGCTTTCAGGTTCAATCCCTCCTTCTTTGGGCTCTTGCCCTGTTCTTCAAAGCCTTGATATTAGTAACAATTTGCTTTCTGGGTCTATCCCTTATAGCCTTGCAAACTCTACCAGGCTTTACTGGCTTAATCTCAGCTTCAATTCCTTTTTGGGCCCGATTCCGACGAGTCTTACTCGCTCCCCTTCACTCACGTTTCTTTCTCTTCAACATAACAATCTCTCTGGCTCCTTACCTGATTCATGGGGTATGGTACCGAAAAATACGGTTTTTAAACTTAAGTCCTTAATCCTTGATAATAACGTATTTTCTGGAAGCATTCCTGCTTCTCTGGGTAATTTGAGCGACCTTGAAGTTGTATCAATTAGTCATAATCACATTGATGGTCAAATCCCAGAAAGTTTTAGTAGATTGCATAACCTCTCGGTTTTGAACTTGAGTAAAAATCGACTCAACGGACATATCCCGGAAAGTATAGGGAACATTTCGACTCTTACTCAGCTCGATTTGTCGGAAAATAATCTAAGTGGAGAAATCCCGGCTTCCCTTACCAATCTACCGAGTCTTATCTCGTTCAATGTTTCTTACAATAACCTTTCTGGCTCTGTTCCCTCTGCTCTGTCTGAAAAATTCAATGCAAGCTCCTTTGTGGGGAACATACAGTTATGTGGTTACACTGGTTCAACCCCATGTCCTTCCCCGGCTCCTTCTCAGATTGTGTCGGGCCTACCTCCCGGGATATCAAAACGCCACCGTCGATTAAGTACCAAAGACATAATACTAATAGCAGCCGGAGCTCTCCTTATAGTCTTGCTTTTACTCTGCTGCATTTTGATTTGTTGCTTGATAAGGAAAAGGGCTGTTTCAAAAGGAAAGAATGGTGATCAAGCTGCAAGACGAGCGGAAAGGGGTGAGAAGTGGGTCCCACCAGTCGGCGGCGAAGTCGAATCCGGTGGAGATTCTGGTGGAAAGCTGGTCCATTTTGACGGTCCGATGGTCTTCACAGCAGACGATCTTCTATGTGCAACTGCCGAGATTATGGGGAAAAGCACTTATGGGACGGTCTATAAAGCCACTATTGAGGATGGAAGTCAAGTGGCAGTAAAGAGATTAAGAGAGAAGATCACGAAAAGTCAAAGGGAATTCGAATCCGAAGTCAATGTTCTTGGGAAAATCCGGCACCCGAACCTCTTGCCTTTACGGGCTTATTACCTAGGACCCAAAGGAGAAAAGCTTTTGGTATTTGATTACATGCCTAAAGGAAGCCTGGCTTCATTCCTCCATGCTCGCGGGCCCGACACATTCATCGATTGGCCAACAAGGATGAAAATAGCAAAGGGAATGACAAGTGGTTTGTTCCACCTCCACAACCAAGAAAACATCATACACGGAAATCTCACGTCTAGTAATATCCTCCTAGATGATCAGAAAAATACTAAGATGTCGGATTTCGGTCTTTCTCGGCTAATGACGACTGCCGCAAATTCTACTGTCATTGCAACTGCTGGAGCATTGGGATATAGATCACCCGAGCTATCAAAGCTTAAGAAAGCCAACACGAAGACCGACATATACAGCCTCGGAGTGATCATTTTGGAACTTTTAACAGGGAAATCCCCAGGAGAGGCGATGAACGGTGGGGATTTGCCGCAATGGGTAGCCTCAATCGTTAAGGAGGAGTGGACTAATGAAGTTTTTGATGTGGAGTTGATGAGGGATGTGTCTAGCATTGGTGATGAGTTGCTTAATACGTTGAAACTAGCTTTGCATTGTGTGGACCCTTCGCCTTCTGCAAGACCAGAAGTTCAACAGGTTTTGCAACAGCTGGAGGAGATTAGACAGGAAAATGGCTCCGCGGGGCCCAGTTTGGGCAGTGGAGACGATGTGTGA 2370 45.23 METQNHILQTLCKYPFDSNSCVSEEKKEKWKKVIISLLLLISIIQPVSSQVWDGVIVTQADYQALQAFKHELIDPRGFLKSWNDSGYGACSGGWAGIKCAQGQVIVIQLPWKGLGGQISEKIGQLQALRKLSLHDNLIAGAIPFSLGFLPNLRGVQLFNNRLSGSIPPSLGSCPVLQSLDISNNLLSGSIPYSLANSTRLYWLNLSFNSFLGPIPTSLTRSPSLTFLSLQHNNLSGSLPDSWGMVPKNTVFKLKSLILDNNVFSGSIPASLGNLSDLEVVSISHNHIDGQIPESFSRLHNLSVLNLSKNRLNGHIPESIGNISTLTQLDLSENNLSGEIPASLTNLPSLISFNVSYNNLSGSVPSALSEKFNASSFVGNIQLCGYTGSTPCPSPAPSQIVSGLPPGISKRHRRLSTKDIILIAAGALLIVLLLLCCILICCLIRKRAVSKGKNGDQAARRAERGEKWVPPVGGEVESGGDSGGKLVHFDGPMVFTADDLLCATAEIMGKSTYGTVYKATIEDGSQVAVKRLREKITKSQREFESEVNVLGKIRHPNLLPLRAYYLGPKGEKLLVFDYMPKGSLASFLHARGPDTFIDWPTRMKIAKGMTSGLFHLHNQENIIHGNLTSSNILLDDQKNTKMSDFGLSRLMTTAANSTVIATAGALGYRSPELSKLKKANTKTDIYSLGVIILELLTGKSPGEAMNGGDLPQWVASIVKEEWTNEVFDVELMRDVSSIGDELLNTLKLALHCVDPSPSARPEVQQVLQQLEEIRQENGSAGPSLGSGDDV 789
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57709724 57712178 + Conep01aG0170300.1 Cone1ag1640 432331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1640 789 Pfam Leucine Rich Repeat 176 196 IPR001611 GO:0005515(InterPro)
Cone1ag1640 789 Pfam Leucine Rich Repeat 151 173 IPR001611 GO:0005515(InterPro)
Cone1ag1640 789 Pfam Leucine Rich Repeat 325 346 IPR001611 GO:0005515(InterPro)
Cone1ag1640 789 Pfam Leucine Rich Repeat 223 243 IPR001611 GO:0005515(InterPro)
Cone1ag1640 789 Pfam Leucine Rich Repeat 348 368 IPR001611 GO:0005515(InterPro)
Cone1ag1640 789 Pfam Leucine Rich Repeat 200 219 IPR001611 GO:0005515(InterPro)
Cone1ag1640 789 SUPERFAMILY RNI-like 121 364 - -
Cone1ag1640 789 Gene3D Phosphorylase Kinase; domain 1 507 578 - -
Cone1ag1640 789 Gene3D Ribonuclease Inhibitor 57 250 IPR032675 -
Cone1ag1640 789 FunFam Leucine-rich repeat receptor-like protein kinase 486 577 - -
Cone1ag1640 789 Pfam Leucine rich repeat 252 311 IPR001611 GO:0005515(InterPro)
Cone1ag1640 789 Pfam Protein tyrosine and serine/threonine kinase 504 769 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone1ag1640 789 ProSiteProfiles Protein kinase domain profile. 501 772 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag1640 789 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 98 395 - -
Cone1ag1640 789 CDD STKc_IRAK 507 772 - -
Cone1ag1640 789 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 41 776 IPR052451 -
Cone1ag1640 789 SUPERFAMILY Protein kinase-like (PK-like) 505 770 IPR011009 -
Cone1ag1640 789 PRINTS Leucine-rich repeat signature 176 189 - -
Cone1ag1640 789 PRINTS Leucine-rich repeat signature 298 311 - -
Cone1ag1640 789 Gene3D Ribonuclease Inhibitor 251 393 IPR032675 -
Cone1ag1640 789 Gene3D Transferase(Phosphotransferase) domain 1 579 780 - -
Cone1ag1640 789 Pfam Leucine rich repeat N-terminal domain 60 99 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1426 Cone-Chr13:10242041 Cone1ag1640 Cone-Chr1:57709724 6.67E-176 dispersed
Cone19ag1424 Cone-Chr19:9287649 Cone1ag1640 Cone-Chr1:57709724 2.01E-174 dispersed
Cone1ag1064 Cone-Chr1:55285078 Cone1ag1640 Cone-Chr1:57709724 4.06E-53 dispersed
Cone1ag1640 Cone-Chr1:57709724 Cone2ag0274 Cone-Chr2:1410258 2.33E-74 dispersed
Cone1ag1640 Cone-Chr1:57709724 Cone18ag0796 Cone-Chr18:4626967 1.87E-65 wgd
Cone1ag1640 Cone-Chr1:57709724 Cone5ag0167 Cone-Chr5:695792 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82517 PF00249 Myb_DNA-binding 1.70E-11 CL0123 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1640 - - - 0.0