Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1642 ATGTCGACGGGAAAGATTGAAGGGAAAAGGAAATCGAGGAGTAGAGGACCGGAGTATATTCCTGAAACACTAGCAAAGTGGAAAGCACACAATGAGGGTGTTGTTTCATCGTCCACTGATGAGCAAAACTCGGTCCGTAGAGCTATGGCAAAGGGATCGAAAAAGGGATGTATGAAAGGCAAAGGTGGGCCTGAAAATTCGAGATGTAATTACAGAGGAGTGAGGCAGAGGACTTGGGGGAAGTGGGTATCAGAAATCCGAGAACCCAACAGGGGAAAAAGGCTCTGGTTAGGTACTTTCCCGAATGCCATCGAAGCCGCACTTGCTTATGATGAAGCGGCTCGGGCCATGTATGGAAGCCGGGCCCGTCTTAACTTCCCAAACATGACGAACTCTGACGATTCAGTCTCCTCTGCTGACACGACCGGCTCTGAATCTTCTCCTACTGCTAACCAGTCTGAGGTGTGTGGCATTAGACCGATTAGAATGGCGAAGTTGGAAGCACAGGAAGAAGAAGAAGAAGATGAAGTAGGAAACAATCACGGGGTCGAACTGGATTCGAGGAGTAAAGAGGAGAACGTTGCTGACTATGTTTCGGCCGAGGATTTGCGGTATTTCGGAATGGAGCAAGTGTTTGATGTGGAGGGGCTTCTGAATCTGATAGATGATAAACCGGCATGTGACTCAAATTTGATGAGGGAATTTAGTAGACATGATGATAATGGTGAAGGATATTTCTCGGAGGAGTTTTCGGATCTGTTATATAAATGGCAGAATCCGGACGTGGAGTTGCTGGAAAGTCTTAATCAGATGGAGCAGAAAGCTTCCAATGGGGATTGTGGTTTTGATTTCTTGAAGAATTATGGCGATGGTTCTAATGATCGGGGAAATGTTGATTTGGAGATTGTTTGA 912 46.27 MSTGKIEGKRKSRSRGPEYIPETLAKWKAHNEGVVSSSTDEQNSVRRAMAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVSEIREPNRGKRLWLGTFPNAIEAALAYDEAARAMYGSRARLNFPNMTNSDDSVSSADTTGSESSPTANQSEVCGIRPIRMAKLEAQEEEEEDEVGNNHGVELDSRSKEENVADYVSAEDLRYFGMEQVFDVEGLLNLIDDKPACDSNLMREFSRHDDNGEGYFSEEFSDLLYKWQNPDVELLESLNQMEQKASNGDCGFDFLKNYGDGSNDRGNVDLEIV 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57719097 57720675 + Conep01aG0170500.1 Cone1ag1642 432333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1642 303 PRINTS Ethylene responsive element binding protein signature 109 129 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag1642 303 PRINTS Ethylene responsive element binding protein signature 71 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag1642 303 FunFam Ethylene-responsive transcription factor 2 69 128 - -
Cone1ag1642 303 Gene3D AP2/ERF domain 70 129 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag1642 303 MobiDBLite consensus disorder prediction 168 191 - -
Cone1ag1642 303 MobiDBLite consensus disorder prediction 124 154 - -
Cone1ag1642 303 CDD AP2 69 128 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag1642 303 MobiDBLite consensus disorder prediction 1 20 - -
Cone1ag1642 303 SUPERFAMILY DNA-binding domain 70 128 IPR016177 GO:0003677(InterPro)
Cone1ag1642 303 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 9 210 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
Cone1ag1642 303 MobiDBLite consensus disorder prediction 1 17 - -
Cone1ag1642 303 ProSiteProfiles AP2/ERF domain profile. 70 127 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag1642 303 SMART rav1_2 70 133 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag1642 303 MobiDBLite consensus disorder prediction 32 46 - -
Cone1ag1642 303 MobiDBLite consensus disorder prediction 31 69 - -
Cone1ag1642 303 Pfam AP2 domain 70 119 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0753 Cone-Chr11:5298849 Cone1ag1642 Cone-Chr1:57719097 5.43E-68 dispersed
Cone1ag1642 Cone-Chr1:57719097 Cone3ag1367 Cone-Chr3:32672418 1.78E-48 dispersed
Cone1ag1642 Cone-Chr1:57719097 Cone10ag0417 Cone-Chr10:1953131 8.56E-29 wgd
Cone1ag1642 Cone-Chr1:57719097 Cone5ag0169 Cone-Chr5:705051 8.04E-166 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45534 PF12796 Ank_2 5.10E-07 CL0465 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1642 - - - 0.0