Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone1ag1642 | ATGTCGACGGGAAAGATTGAAGGGAAAAGGAAATCGAGGAGTAGAGGACCGGAGTATATTCCTGAAACACTAGCAAAGTGGAAAGCACACAATGAGGGTGTTGTTTCATCGTCCACTGATGAGCAAAACTCGGTCCGTAGAGCTATGGCAAAGGGATCGAAAAAGGGATGTATGAAAGGCAAAGGTGGGCCTGAAAATTCGAGATGTAATTACAGAGGAGTGAGGCAGAGGACTTGGGGGAAGTGGGTATCAGAAATCCGAGAACCCAACAGGGGAAAAAGGCTCTGGTTAGGTACTTTCCCGAATGCCATCGAAGCCGCACTTGCTTATGATGAAGCGGCTCGGGCCATGTATGGAAGCCGGGCCCGTCTTAACTTCCCAAACATGACGAACTCTGACGATTCAGTCTCCTCTGCTGACACGACCGGCTCTGAATCTTCTCCTACTGCTAACCAGTCTGAGGTGTGTGGCATTAGACCGATTAGAATGGCGAAGTTGGAAGCACAGGAAGAAGAAGAAGAAGATGAAGTAGGAAACAATCACGGGGTCGAACTGGATTCGAGGAGTAAAGAGGAGAACGTTGCTGACTATGTTTCGGCCGAGGATTTGCGGTATTTCGGAATGGAGCAAGTGTTTGATGTGGAGGGGCTTCTGAATCTGATAGATGATAAACCGGCATGTGACTCAAATTTGATGAGGGAATTTAGTAGACATGATGATAATGGTGAAGGATATTTCTCGGAGGAGTTTTCGGATCTGTTATATAAATGGCAGAATCCGGACGTGGAGTTGCTGGAAAGTCTTAATCAGATGGAGCAGAAAGCTTCCAATGGGGATTGTGGTTTTGATTTCTTGAAGAATTATGGCGATGGTTCTAATGATCGGGGAAATGTTGATTTGGAGATTGTTTGA | 912 | 46.27 | MSTGKIEGKRKSRSRGPEYIPETLAKWKAHNEGVVSSSTDEQNSVRRAMAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVSEIREPNRGKRLWLGTFPNAIEAALAYDEAARAMYGSRARLNFPNMTNSDDSVSSADTTGSESSPTANQSEVCGIRPIRMAKLEAQEEEEEDEVGNNHGVELDSRSKEENVADYVSAEDLRYFGMEQVFDVEGLLNLIDDKPACDSNLMREFSRHDDNGEGYFSEEFSDLLYKWQNPDVELLESLNQMEQKASNGDCGFDFLKNYGDGSNDRGNVDLEIV | 303 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 57719097 | 57720675 | + | Conep01aG0170500.1 | Cone1ag1642 | 432333 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone1ag1642 | 303 | PRINTS | Ethylene responsive element binding protein signature | 109 | 129 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone1ag1642 | 303 | PRINTS | Ethylene responsive element binding protein signature | 71 | 82 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone1ag1642 | 303 | FunFam | Ethylene-responsive transcription factor 2 | 69 | 128 | - | - | |
Cone1ag1642 | 303 | Gene3D | AP2/ERF domain | 70 | 129 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone1ag1642 | 303 | MobiDBLite | consensus disorder prediction | 168 | 191 | - | - | |
Cone1ag1642 | 303 | MobiDBLite | consensus disorder prediction | 124 | 154 | - | - | |
Cone1ag1642 | 303 | CDD | AP2 | 69 | 128 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone1ag1642 | 303 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cone1ag1642 | 303 | SUPERFAMILY | DNA-binding domain | 70 | 128 | IPR016177 | GO:0003677(InterPro) | |
Cone1ag1642 | 303 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 9 | 210 | - | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER) | |
Cone1ag1642 | 303 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Cone1ag1642 | 303 | ProSiteProfiles | AP2/ERF domain profile. | 70 | 127 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone1ag1642 | 303 | SMART | rav1_2 | 70 | 133 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone1ag1642 | 303 | MobiDBLite | consensus disorder prediction | 32 | 46 | - | - | |
Cone1ag1642 | 303 | MobiDBLite | consensus disorder prediction | 31 | 69 | - | - | |
Cone1ag1642 | 303 | Pfam | AP2 domain | 70 | 119 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone11ag0753 | Cone-Chr11:5298849 | Cone1ag1642 | Cone-Chr1:57719097 | 5.43E-68 | dispersed | |
Cone1ag1642 | Cone-Chr1:57719097 | Cone3ag1367 | Cone-Chr3:32672418 | 1.78E-48 | dispersed | |
Cone1ag1642 | Cone-Chr1:57719097 | Cone10ag0417 | Cone-Chr10:1953131 | 8.56E-29 | wgd | |
Cone1ag1642 | Cone-Chr1:57719097 | Cone5ag0169 | Cone-Chr5:705051 | 8.04E-166 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45534 | PF12796 | Ank_2 | 5.10E-07 | CL0465 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone1ag1642 | - | - | - | 0.0 |