Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1647 ATGGTCGGAAATTCTCCGTGCGCTTCCTGCAAGTTGCTAAAACGGCGTTGCGCTAAAAACTGTATCTTCGCGCCTTATTTTCCGTCCGACGACCCCCAAAAGTTCGCCATTGTTCACAAAGTCTTCGGTGCTAGCAATGTCAGCAAGATGCTCCAGGAACTTCCGGTGGAGAAGAGAGGAGACGCAGTGAGTAGTATAGTGTACGAGGCAAATGCAAGAGTGAGGGACCCAGTTTATGGGTGTGTAGGGGCAATATCGTATTTGCAGAACCAAGTATCCGACCTTCAGATGCAGCTTGCTGTGGCTGAGGCCGAGATTCTCTGCGTTCAGATGCAGCAAGACCAAGATCACTACCTCAATCATAACTCCAACCATAGTAATAACAACAGTTTCCTGTCTAATCAAACAGTACTAGGAATAAACTCACATGATCATGATCAGATGACAGACATAAATGGTCATTATGCGCATTTGCAGGAACCTTATTTTCTGCAAACTAACCTCCCCGCTCAGTGCCTTAATTTTGCCTCCACCTCGACCAGTGGCAATATCAATCATGTATCTTTCAACAAGAACAGCTTTTTTGGACATGACATGGTTTCTTAA 606 45.38 MVGNSPCASCKLLKRRCAKNCIFAPYFPSDDPQKFAIVHKVFGASNVSKMLQELPVEKRGDAVSSIVYEANARVRDPVYGCVGAISYLQNQVSDLQMQLAVAEAEILCVQMQQDQDHYLNHNSNHSNNNSFLSNQTVLGINSHDHDQMTDINGHYAHLQEPYFLQTNLPAQCLNFASTSTSGNINHVSFNKNSFFGHDMVS 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57740210 57740909 - Conep01aG0171000.1 Cone1ag1647 432338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1647 201 Coils Coil 85 105 - -
Cone1ag1647 201 Pfam Lateral organ boundaries (LOB) domain 6 102 IPR004883 -
Cone1ag1647 201 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Cone1ag1647 201 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 133 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0741 Cone-Chr11:5157765 Cone1ag1647 Cone-Chr1:57740210 3.67E-75 dispersed
Cone1ag1647 Cone-Chr1:57740210 Cone7ag0064 Cone-Chr7:276888 2.57E-61 dispersed
Cone1ag1647 Cone-Chr1:57740210 Cone18ag0786 Cone-Chr18:4481951 2.23E-79 wgd
Cone1ag1647 Cone-Chr1:57740210 Cone5ag0176 Cone-Chr5:730885 1.87E-97 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45535 PF00160 Pro_isomerase 2.60E-45 CL0475 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1647 - - - 0.0