Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1650 ATGTACGAGGCCAAGTATCCAGAAGTGGATATGGCCGTCATGATTCAGGTCAAGAACATTGCCGACATGGGCGCCTACGTCTCCCTCCTCGAATACAACAACATCGAGGGCATGATTCTCTTCTCCGAACTCTCTCGCCGCCGGATTCGCAGCGTTAGCAGCTTGATTAAGGTTGGCCGCATCGAGCCTGTCATGGTGCTCAGAGTTGACAAGGAGAAGGGATACATTGATTTGAGCAAGAGGAGAGTCTCTGAGGAGGATATTCAGGCTTGTGAAGAGAGGTACAACAAGAGCAAGCTCGTTCACTCTATTATGCGTCACGTCGCCGAAACTATGAGCATCGATTTGGAGGAGCTGTATGTCCATGTTGCCTGGCCTTTATACCGGAAATATGGCCATGCTTTTGAGGCATTCAAGATAGTTGTTACTGATCCTGATTCAGTTCTGAACACACTCACCCGTGAAGTCAAGGAGACTGGTCCTGATGGACAGGAGGTTACAAAGGTAGTTCCTGCTTTGTCAGAAGATGTAAAAGAAGCGTTGATAAAACATCCGGAGAAGAGTGACTCCCCAACCATTGAAGATCCGAGCAGACGTTGA 600 48.5 MYEAKYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETMSIDLEELYVHVAWPLYRKYGHAFEAFKIVVTDPDSVLNTLTREVKETGPDGQEVTKVVPALSEDVKEALIKHPEKSDSPTIEDPSRR 199
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57751598 57753152 + Conep01aG0171300.1 Cone1ag1650 432341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1650 199 CDD S1_IF2_alpha 7 82 IPR044126 GO:0003723(InterPro)
Cone1ag1650 199 Gene3D Translation initiation factor 2; subunit 1; domain 2 84 162 IPR024054 -
Cone1ag1650 199 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 1 189 IPR011488 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0005850(PANTHER)|GO:0006413(PANTHER)|GO:0033290(PANTHER)|GO:0043022(PANTHER)
Cone1ag1650 199 MobiDBLite consensus disorder prediction 180 199 - -
Cone1ag1650 199 Pfam S1 RNA binding domain 7 81 IPR003029 GO:0003676(InterPro)
Cone1ag1650 199 FunFam Eukaryotic translation initiation factor 2 subunit alpha 84 188 - -
Cone1ag1650 199 Gene3D - 1 83 IPR012340 -
Cone1ag1650 199 SMART S1_6 8 81 IPR003029 GO:0003676(InterPro)
Cone1ag1650 199 SUPERFAMILY eIF2alpha middle domain-like 83 158 IPR024054 -
Cone1ag1650 199 FunFam Eukaryotic translation initiation factor 2 subunit alpha 1 83 - -
Cone1ag1650 199 ProSiteProfiles S1 domain profile. 10 81 IPR003029 GO:0003676(InterPro)
Cone1ag1650 199 Pfam Eukaryotic translation initiation factor 2 alpha subunit 119 155 IPR011488 GO:0003723(InterPro)|GO:0003743(InterPro)
Cone1ag1650 199 SUPERFAMILY Nucleic acid-binding proteins 4 86 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1650 Cone-Chr1:57751598 Cone5ag0179 Cone-Chr5:738568 3.52E-123 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1650 K03237 - csv:101209681 342.428