Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1673 ATGATATGGGACATTTTCCACACGACCCGCTGCTGTCGGAATGCTCTTTCCGCCTTGTCTCAAGCCCTAGCAGTCCATGCAAACGCCACTCAAAACAGCGACAGCAATTTCATCTTCATTGCACAAGATCAATGGGAAAAATGTAGCGGCTCCTTTTTTCGCCAGAACTCGGTCTCTGTACACGATTGTGGTTTTGGAGATATCGTTAGTAGGAACGATAAATGTTTGGGCCTAACTTTGACTTCTGCTGTTCAAGAAGCTCCATATCAAGTTGCTTTGAAGAAATGCTCGGGCAGGTTCGACGATAATTTCGATGAAAAATGCGGGAACTGCACGAGTGCTATTGTAGATTTTAGAACCCGCTTAATGGAGTTACATGGAGTGAAAGATGGTGATGATATCGGCCGAGGGGCTTGTGGGTTGGGGGCTATTGTTTCTGTTGCTGCTGGGAATTTGCAGGATGAGGACTACTTCAAAATCAAATATTCCGACGCGAAGACAATCTTTGCACTGGTAATGGCGGTCATAGCGCTATTGATGATCATAATGCTAATACGATACGTGACGAAGAAAGAACCCGAAAAACCTACCGAGTTAAACGATGTTTCTGCATGGTCGGGACTGTACAGATTCTCAAGGGCTGAGATTGAGAATGCCATAAATTTTGGGGATGAAAAGGAGAGCCTAGGAAGAGGAAGTGCTGGTCAAGTTTATAAAGGCATCCTACCAAGTGGTCAAGTTGTGGCCATTAAGGAAATTTATGTGAGCAATACTTCTGATTCTTTCTTACGAGAAGTTAGCAATCTTACCAGAGTTCGGCATCCAAACCTTGTTTGCTTATTGGGTTGTTGCATGGAGAATGGCAAGCAGTACCTGGTTTACGAGTACTGTCCGGAAGGGAACCTCGCTACACATCTATTGAGAAGAAACGGACTTCTAAGTTGGAGAAAACGGATCGAGATTTTAAGAAACTGCGCACTTGCACTTCGGTATCTCCACCACTTCATAGATGGTTGCATTGTGCATAGAGATATCAAGCTGACAAACATCCTTCTGACGGAGAACTTGCAACCCAAGCTGTCTGATTTTGGGCTGGCAAGAATGTTGGGAATGGATGAGACAAAAGTATTCACAGATGTAAGAGGAACTATAGGCTATATGGATCCAGAATACATGAGCAATGCCAAGCTAACCTGTGCTAGTGACATCTATAGTTTTGGCATTGTCATTCTCCAACTCTTATCAGGTCAAAAGGTCTTTGAACTGGATCTTGAAGCCAGAGACCAATTAACCAGAAAGGCAAAGGATGTGAATATGGGAATACGTCCGCAATTGGATTTCGAGGATCCGAGCCTAAACGGAAAAATAAACAAAGCAGACTTTGCTTCCATCTTACAAATTGGAGCTCTATGCGTCGCCAGATCGAGCAAAGGTCGCCCGAATATTGATGTTGTCTTTGAAGAGCTCGACAAGATCTATAAAAACACACTTGAAAAACAGAGTCCTGAGTCGGAGATCATGAACTCGTCGATGTCTAAATGTTATGATGTGATTCCAGTTTGA 1563 43.57 MIWDIFHTTRCCRNALSALSQALAVHANATQNSDSNFIFIAQDQWEKCSGSFFRQNSVSVHDCGFGDIVSRNDKCLGLTLTSAVQEAPYQVALKKCSGRFDDNFDEKCGNCTSAIVDFRTRLMELHGVKDGDDIGRGACGLGAIVSVAAGNLQDEDYFKIKYSDAKTIFALVMAVIALLMIIMLIRYVTKKEPEKPTELNDVSAWSGLYRFSRAEIENAINFGDEKESLGRGSAGQVYKGILPSGQVVAIKEIYVSNTSDSFLREVSNLTRVRHPNLVCLLGCCMENGKQYLVYEYCPEGNLATHLLRRNGLLSWRKRIEILRNCALALRYLHHFIDGCIVHRDIKLTNILLTENLQPKLSDFGLARMLGMDETKVFTDVRGTIGYMDPEYMSNAKLTCASDIYSFGIVILQLLSGQKVFELDLEARDQLTRKAKDVNMGIRPQLDFEDPSLNGKINKADFASILQIGALCVARSSKGRPNIDVVFEELDKIYKNTLEKQSPESEIMNSSMSKCYDVIPV 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57879922 57882082 + Conep01aG0173600.1 Cone1ag1673 432364

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1673 520 SUPERFAMILY Protein kinase-like (PK-like) 201 489 IPR011009 -
Cone1ag1673 520 Pfam Protein kinase domain 226 427 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag1673 520 ProSitePatterns Serine/Threonine protein kinases active-site signature. 340 352 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone1ag1673 520 FunFam probable receptor-like protein kinase At5g59700 297 508 - -
Cone1ag1673 520 Gene3D Phosphorylase Kinase; domain 1 194 296 - -
Cone1ag1673 520 PANTHER OS01G0750732 PROTEIN 34 507 IPR050885 -
Cone1ag1673 520 Pfam SPARK 7 127 IPR043891 -
Cone1ag1673 520 Gene3D Transferase(Phosphotransferase) domain 1 298 516 - -
Cone1ag1673 520 ProSiteProfiles Protein kinase domain profile. 223 518 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag1673 520 SMART serkin_6 223 493 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1673 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1673 Cone-Chr1:57879922 Cone12ag0659 Cone-Chr12:6043620 5.33E-57 dispersed
Cone2ag0140 Cone-Chr2:746322 Cone1ag1673 Cone-Chr1:57879922 2.68E-22 dispersed
Cone1ag1673 Cone-Chr1:57879922 Cone5ag0917 Cone-Chr5:3924356 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g804 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag1673 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla03g01076 . . . . . . Lsi06g00730 . . Cme02g00934
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012648 0 0 0 1 0 1 1 1 1 2 1 1 1 1 2 1 1 2 0 1 1 1 1 2 1 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82520 PF00412 LIM 7.80E-10 CL0167 Cone PK