Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1682 ATGGAGCTGAAATGGGTTTCCAATTTTTGCGCTATTAGAGCTCCTAAATTACATGTTATGCAACTGTTTTTCTTGCTGATGCTCTGCTTAAGCCCTTCCCACTCTTTAGACCTTGACCCAGAAGACAAAACCTCTCTTTTATTGCTCAAATCATGGTTCCAAGACCCTAACCAGAAGTTGTCTACCTGGGTGGGTTCCAATTGCACTAACTGGACTGGAATTGCCTGCGAGAACCAGACCGGTAGAGTAGTTTCAATCAATCTGATTAACATGAACCTATCAGGCAAAATCCACCCCAGTTTGTGCAAGCTTGTGTTTCTAGAAAACTTGGTTTTGTCCCAAAATAACTTTTCAAGCCCAATCCCACGTTGTTTTGGGTCCTTGATTAACCTCGAAACAATTGATCTTGGCCATAATCGGTTTCAAGGTGTTATTCCTGATACTTTGATGAGACTAAGGAACATAAAGGAGCTTGTTTTGACAGGTAACAAAGCTTTAGGGGGACCTATCCCCTATTGGATAGGTAATTTCTCATCTAAGCTTGAAAAGCTTGATCTTGGCTTTAATTCATTTAGTGGGGAACTGCCTGATAGCTTGTTATACTCAAAATCGTTGAAGTATTTGGATCTTCAATTTAATTACTTATGGGGAAATCTTCGTGACTTTTATCAATCCTTAGTCACCCTCAATCTTGGGTCCAATCAATTTTCAGGCACCTTACCCTGTTTCTCAGCTTCTGTTCAGTCTCTTACTGCTTTAAATTTAGCTAACAACTCCATTGTTGGAGGAATACCTACTTGCATTGCTTCACTTCGAGCTCTACTACATCTTAATCTATCTTTCAATCACTTAGCTTACAAGATATCTCCTAGGCTTATATTTTCAGACAAGCTTCTTGTCTTGGACCTGAGTAATAATGATTTAGCGGGTCCGCTTCCTAGCAAGATTGCTCAAACCACAGAAAAATCCGGACTTGTTCTTCTTGACCTCTCTCATAATCATTTCTCTGGGGAGATCCCATCAAAGATCACAGAATTGAAAAGCTTGCAAGCATTGTTTCTTTCACACAATCTTCTCATGGGGGAAATTCCTCCTAGAATAGGAAATTTGACTTACCTCCAAGTGATTGATCTTTCATTCAACTCATTATCAGGCTCGATTCCATTGAATGTTGTTGGATGCTTTCAGCTCCTTGCTTTAATACTCAATGATAATAATATTTCTGGTGAAATCCAGCCTGAGCTTGATGCGTTAGATAGCTTGAAGATACTTGATATTAGCAACAATATGATTTCTGGGGAGGTCCCACTTACTCTTGCAGGATGTAAATCACTTGAGATAGCTGACTTTAGCTCCAACAATCTGTCTGGAACTTTGAATGATGCCATAACAAAATGGTCAAACCTTAGGTACCTCTCTCTGGCTCAGAATAAATTCAGTGGAAATCTACCCAGTTGGCTTTTTTCGTTTGAAGCTATTCAGCTAATGGATTTTTCTGGGAACAAATTTTCGGGGTTCATACCAGAAGGTAACTTCAACATAAGCTTGAATTTCAACAATGGAGATATTGGAGGAATTTATAAAGATGCGTTTATTGAAAATCAAGTTTTGGACTTTAAGATTTCTACAATTGTTGCTGATAGCAGTGAATTGAGTTTTAGTTACGACATCTCCTCAGCTGTTGGAATTGATCTGTCAAGTAATGTTCTACATGGGACTATTCCGGAAGGTTTATTTGCATTAAATGGTATTCAAATTATGAATCTTTCGCACAATGCTCTTGAAGGTGAGGTTCCAGGATTAGAGAACATGAAGAGATTAAGGGCCTTGGATTTGTCTTATAATTATTTGTCTGGTCAGATTCCAGGAAATATGTTCAGGCTTAAAGATCTTACACTTTTGGATTTGTCATATAACTGCTTATCCGGATTAGTGTCTAAGGCAGGGTATGGGAGGTTCCCAGGTGCGTTTTCGGGGAATCCAGACTTGTGTGTGGAATCTTCTGACAGAAATAGTTGTGGTTCAGAGAATACTCCAGCCCTGCCGGGGAGGAAGTTTCAAGAAGAAATGATAGAGGGGCCGATATCTGTTTGGGTGTTCTGTTTAAGTGCTTTTGTTAGTTTTTATTTGGGTGTTATTGCTCTATTCTGTTCAGCTCGAGCTAGAAGTTACATTTTCCAAACTAAAGCTTGTTTGGAGTTCTAG 2205 39.18 MELKWVSNFCAIRAPKLHVMQLFFLLMLCLSPSHSLDLDPEDKTSLLLLKSWFQDPNQKLSTWVGSNCTNWTGIACENQTGRVVSINLINMNLSGKIHPSLCKLVFLENLVLSQNNFSSPIPRCFGSLINLETIDLGHNRFQGVIPDTLMRLRNIKELVLTGNKALGGPIPYWIGNFSSKLEKLDLGFNSFSGELPDSLLYSKSLKYLDLQFNYLWGNLRDFYQSLVTLNLGSNQFSGTLPCFSASVQSLTALNLANNSIVGGIPTCIASLRALLHLNLSFNHLAYKISPRLIFSDKLLVLDLSNNDLAGPLPSKIAQTTEKSGLVLLDLSHNHFSGEIPSKITELKSLQALFLSHNLLMGEIPPRIGNLTYLQVIDLSFNSLSGSIPLNVVGCFQLLALILNDNNISGEIQPELDALDSLKILDISNNMISGEVPLTLAGCKSLEIADFSSNNLSGTLNDAITKWSNLRYLSLAQNKFSGNLPSWLFSFEAIQLMDFSGNKFSGFIPEGNFNISLNFNNGDIGGIYKDAFIENQVLDFKISTIVADSSELSFSYDISSAVGIDLSSNVLHGTIPEGLFALNGIQIMNLSHNALEGEVPGLENMKRLRALDLSYNYLSGQIPGNMFRLKDLTLLDLSYNCLSGLVSKAGYGRFPGAFSGNPDLCVESSDRNSCGSENTPALPGRKFQEEMIEGPISVWVFCLSAFVSFYLGVIALFCSARARSYIFQTKACLEF 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57914692 57917781 - Conep01aG0174500.1 Cone1ag1682 432373

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1682 734 FunFam LRR receptor-like serine/threonine-protein kinase EFR 39 320 - -
Cone1ag1682 734 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 393 677 - -
Cone1ag1682 734 FunFam LRR receptor-like serine/threonine-protein kinase 321 392 - -
Cone1ag1682 734 SUPERFAMILY RNI-like 293 642 - -
Cone1ag1682 734 Pfam Leucine rich repeat N-terminal domain 40 76 IPR013210 -
Cone1ag1682 734 Gene3D Ribonuclease Inhibitor 41 157 IPR032675 -
Cone1ag1682 734 Pfam Leucine rich repeat 107 164 IPR001611 GO:0005515(InterPro)
Cone1ag1682 734 Pfam Leucine rich repeat 225 284 IPR001611 GO:0005515(InterPro)
Cone1ag1682 734 Pfam Leucine Rich Repeat 468 489 IPR001611 GO:0005515(InterPro)
Cone1ag1682 734 Pfam Leucine Rich Repeat 180 199 IPR001611 GO:0005515(InterPro)
Cone1ag1682 734 Pfam Leucine Rich Repeat 348 370 IPR001611 GO:0005515(InterPro)
Cone1ag1682 734 Pfam Leucine Rich Repeat 420 442 IPR001611 GO:0005515(InterPro)
Cone1ag1682 734 Pfam Leucine Rich Repeat 607 626 IPR001611 GO:0005515(InterPro)
Cone1ag1682 734 Pfam Leucine Rich Repeat 298 316 IPR001611 GO:0005515(InterPro)
Cone1ag1682 734 Pfam Leucine Rich Repeat 325 345 IPR001611 GO:0005515(InterPro)
Cone1ag1682 734 Pfam Leucine Rich Repeat 373 390 IPR001611 GO:0005515(InterPro)
Cone1ag1682 734 Gene3D Ribonuclease Inhibitor 389 675 IPR032675 -
Cone1ag1682 734 Gene3D Ribonuclease Inhibitor 164 388 IPR032675 -
Cone1ag1682 734 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 247 718 - -
Cone1ag1682 734 SMART LRR_typ_2 128 151 IPR003591 -
Cone1ag1682 734 SMART LRR_typ_2 104 127 IPR003591 -
Cone1ag1682 734 SMART LRR_typ_2 628 651 IPR003591 -
Cone1ag1682 734 SMART LRR_typ_2 271 296 IPR003591 -
Cone1ag1682 734 SMART LRR_typ_2 346 370 IPR003591 -
Cone1ag1682 734 SMART LRR_typ_2 418 441 IPR003591 -
Cone1ag1682 734 SUPERFAMILY L domain-like 40 314 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1682 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1682 Cone-Chr1:57914692 Cone5ag0928 Cone-Chr5:3976161 1.58E-211 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g833 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone5ag0928 Cone1ag1682 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla03g01042 Cam03g1087 Cec03g1095 Cco03g1084 Clacu03g1065 Cmu03g1648 Cre03g1350 . . . Cme02g00927
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012382 1 0 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 28