Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone1ag1687 | ATGGCGATGGAGTTCGATGCCGGAATTCCGATTTCACGACCGTCTGTCACGGAGGCTTCCTCTTCTGCCTCGACGCCGTCGTTAAGCAAAGATGCACTGTGGCATATGAACTTGATGTCCAGTGAAAGAATGGAATCTGGGCCTTATCCTGAGAGGACAGGGGAGCCGGATTGCTCTTATTACGTCCGAACTGGACTCTGTAGATTCGGGGAGACATGTCGATTTAATCACCCTCCAAACAGAAGCCTGGCTATTGCTGCAGCAAGGATGAAGGGGGACTACCCAGAAAGAGTTGGACAACTAGAATGTCAGTACTATCTGAAGACAGGAACTTGCAAGTTTGGAGCAACATGCAAGTTTCATCATCCTAGAGACAAGGCCGGAATTGCAGGAAGAGTTTCACTTAACATATTGGGCTACCCACTTCGCCCGAATGAAACTGAATGTACCTATTATCTAAGAACTGGACAGTGCAAGTTTGGAAGCACGTGCAAATTCCACCACCCACAACCAACTAACATGATGGTCTCCTTGCATGGGTCCCCTATTTATCCGACTGTTCAATCTCCAACTACTCCTACCAAGCCGTCGTATCCAGGAGGAATTACGAATTGGTCAGGTGCATCTTTTATTCCCAGTTCTAGATGGCAAGGCTCCTCTAGTTATGCTCCTTTAATCGTCCCTCAAGGAGTGGTTTCAGCTCCAAGTTGGAATGCTTACAGTGGTCAACTGGGTACGGTTTCTTCATCAGAAACTCAGCAACAAGCAGCAGGGAAAAGTCAAATCTACGGAACTTCTCGCCAGAGTGAGACAGCTAATGCAGGAGGGTCTCAGACAGCTTTTTCTTCATATCGGTCTCGTCCCATCCCTGTAGGGTTCTATGCTTTGCAAAGGGAGAATGTCTTTCCCGAAAGGCCTGGTCAGCCTGAATGTCAGTTTTACATGAAAACTGGAGATTGCAAGTTTGGCGCAGTTTGCCGGTTCCATCATCCAAGAGAGAGACTTATCCCTCCTCCGGACTGTGTGTTGAGCCCAATGGGCCTTCCCTTACGTCAGGGAGAGCCTCTGTGTATCTTCTATTCTCGTTACGGAATCTGCAAATTCGGTCCGAGTTGCAAGTTTGACCATCCAATGGAAATCTTCACATACAATCTTTCGCAATCAGCTTCATCCGAAACTCCGGTTTGGCGTCTGTTAGGGTCATCTTCAGGACCTTCTGCACTAAACTTGTCTTCAGGACTGGTTGAACCTGAGACCAGACAGATGCTTGGTGATGATAACATTGACCCAGAGGGTTGA | 1299 | 47.88 | MAMEFDAGIPISRPSVTEASSSASTPSLSKDALWHMNLMSSERMESGPYPERTGEPDCSYYVRTGLCRFGETCRFNHPPNRSLAIAAARMKGDYPERVGQLECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNILGYPLRPNETECTYYLRTGQCKFGSTCKFHHPQPTNMMVSLHGSPIYPTVQSPTTPTKPSYPGGITNWSGASFIPSSRWQGSSSYAPLIVPQGVVSAPSWNAYSGQLGTVSSSETQQQAAGKSQIYGTSRQSETANAGGSQTAFSSYRSRPIPVGFYALQRENVFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLIPPPDCVLSPMGLPLRQGEPLCIFYSRYGICKFGPSCKFDHPMEIFTYNLSQSASSETPVWRLLGSSSGPSALNLSSGLVEPETRQMLGDDNIDPEG | 432 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 57933628 | 57936991 | - | Conep01aG0175000.1 | Cone1ag1687 | 432378 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone1ag1687 | 432 | PANTHER | PROTEIN PHOSPHATASE RELATED | 32 | 379 | IPR050974 | GO:0003729(PANTHER) | |
| Cone1ag1687 | 432 | SMART | c3hfinal6 | 351 | 378 | IPR000571 | GO:0046872(InterPro) | |
| Cone1ag1687 | 432 | SMART | c3hfinal6 | 143 | 170 | IPR000571 | GO:0046872(InterPro) | |
| Cone1ag1687 | 432 | SMART | c3hfinal6 | 305 | 332 | IPR000571 | GO:0046872(InterPro) | |
| Cone1ag1687 | 432 | SMART | c3hfinal6 | 97 | 124 | IPR000571 | GO:0046872(InterPro) | |
| Cone1ag1687 | 432 | SMART | c3hfinal6 | 52 | 79 | IPR000571 | GO:0046872(InterPro) | |
| Cone1ag1687 | 432 | Gene3D | - | 304 | 392 | - | - | |
| Cone1ag1687 | 432 | Gene3D | - | 50 | 128 | - | - | |
| Cone1ag1687 | 432 | SUPERFAMILY | CCCH zinc finger | 144 | 171 | IPR036855 | GO:0046872(InterPro) | |
| Cone1ag1687 | 432 | SUPERFAMILY | CCCH zinc finger | 101 | 126 | IPR036855 | GO:0046872(InterPro) | |
| Cone1ag1687 | 432 | Gene3D | - | 129 | 178 | - | - | |
| Cone1ag1687 | 432 | ProSiteProfiles | Zinc finger C3H1-type profile. | 143 | 171 | IPR000571 | GO:0046872(InterPro) | |
| Cone1ag1687 | 432 | MobiDBLite | consensus disorder prediction | 251 | 281 | - | - | |
| Cone1ag1687 | 432 | SUPERFAMILY | CCCH zinc finger | 309 | 335 | IPR036855 | GO:0046872(InterPro) | |
| Cone1ag1687 | 432 | SUPERFAMILY | CCCH zinc finger | 354 | 379 | IPR036855 | GO:0046872(InterPro) | |
| Cone1ag1687 | 432 | SUPERFAMILY | CCCH zinc finger | 57 | 80 | IPR036855 | GO:0046872(InterPro) | |
| Cone1ag1687 | 432 | ProSiteProfiles | Zinc finger C3H1-type profile. | 351 | 379 | IPR000571 | GO:0046872(InterPro) | |
| Cone1ag1687 | 432 | ProSiteProfiles | Zinc finger C3H1-type profile. | 52 | 80 | IPR000571 | GO:0046872(InterPro) | |
| Cone1ag1687 | 432 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 146 | 170 | IPR000571 | GO:0046872(InterPro) | |
| Cone1ag1687 | 432 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 54 | 79 | IPR000571 | GO:0046872(InterPro) | |
| Cone1ag1687 | 432 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 353 | 378 | IPR000571 | GO:0046872(InterPro) | |
| Cone1ag1687 | 432 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 306 | 332 | IPR000571 | GO:0046872(InterPro) | |
| Cone1ag1687 | 432 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 102 | 124 | IPR000571 | GO:0046872(InterPro) | |
| Cone1ag1687 | 432 | ProSiteProfiles | Zinc finger C3H1-type profile. | 97 | 125 | IPR000571 | GO:0046872(InterPro) | |
| Cone1ag1687 | 432 | ProSiteProfiles | Zinc finger C3H1-type profile. | 305 | 333 | IPR000571 | GO:0046872(InterPro) | |
| Cone1ag1687 | 432 | FunFam | Zinc finger nuclease 2 | 51 | 128 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone12ag1507 | Cone-Chr12:10710518 | Cone1ag1687 | Cone-Chr1:57933628 | 1.27E-28 | dispersed | |
| Cone18ag0696 | Cone-Chr18:3717195 | Cone1ag1687 | Cone-Chr1:57933628 | 1.72E-43 | dispersed | |
| Cone1ag1687 | Cone-Chr1:57933628 | Cone20ag0922 | Cone-Chr20:6637882 | 1.34E-28 | dispersed | |
| Cone1ag1687 | Cone-Chr1:57933628 | Cone10ag0605 | Cone-Chr10:2840936 | 1.04E-121 | wgd | |
| Cone1ag1687 | Cone-Chr1:57933628 | Cone3ag0631 | Cone-Chr3:3113517 | 8.07E-129 | wgd | |
| Cone1ag1687 | Cone-Chr1:57933628 | Cone5ag0933 | Cone-Chr5:3992290 | 1.34E-196 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 45538 | None | None | None | None | Cone | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone1ag1687 | - | - | - | 0.0 |