Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1701 ATGGCGTTTTCATTGCGAGCTCATCCTTGTCCTATAGTCTACAAAGTGGTCAATAGCAGCAGCAGCTCTAGTTCTAGCTCTACCTCCCACGCTCCCGAATCCTTATATATCAGACGCGCAGCTGAGATAGCCGATAAGTCCGCCGGATTGACCTCTCCCCACCCCAATTTTGGATGCGTGATAGCTACTTCTACCGGATCCGTGGCGGGGGAGGGATTCCTCTACGCTCAGGGAACCAAGTGCGCCGAGCTCCAAGCTGTCGAAGAAGCTGGCGAGCTATGTCGTGGTGCCACCGCATTTGTTAACTTGGAGCCTGGTGATTGCCATGGCGATCACACCGCGGTGTCCGCTCTCGTCCAGGCAGGGATTACAAGGGTGGTGGTTGGACTGAGGCATCCATTGCAGCATTTGAGAGGCAGTGCTGTGAGGGCTTTGAGAAGTCAAGGGCTGCAGGTTGATGTTCTTGGAGAGGACATAAAGAGTAAATGCATCGAGGAAGCTCGACAATCATGTCTCTCTGTTAATGCTCCCTTGATTTTTAGAGCTGCTTCTGGAGTTCCCTTCTCCGTTCTCAAGTATGCTATGACCCTTGATGGAAAAATTGCTGCAACTAGTGGGCATGCTGCATGGATTAGCAGCAAAAAATCCAGATACCGAGTTTTTGAATTACGAGGCAGAAGTGATGCTGTTATCGTGGGAGGAAACACTGTGCGCAGAGATAATCCTAGATTAACTGCAAGACATGGCGGTGCGCATATGCCAGTCCGCATTGTCATGACAAGGACTCTTGATCTGCCCGAAGAAGCACATCTTTGGGATGTTTCTGATGTACCCACTTTGGTTGTTACACAAAGGGGTGCCAGAAGGAGTTTCCAGAAGTTTCTTGCATCCAAAGGAGTTGAAGTTATTGAATTTGACATTCTAAACACAAGAGATGTAATGGAATACTTTCATGATCGTGGTTATCTTTCAATTTTGTGGGAGTGTGGAGGGACACTGGCAGCATCGGCTATTTCATCTGGAGTAATACACAAGGTTTTTGCGTTTGTTGCTCCTAAAATTATTGGCGGAAAGAATGCGCCATCTCCTGTTGGTGAACTTGGAATGGTTGAGATGTCCCAAGCTTTAGACTTAATTGAAGTCCAGTACGAGCAGGTTGGACCTGACATGCTTATTAGTGGATTTCTTCAACCCATACCTGACATTACACCAGTTATCCCATCCATTGATGAAACTTTTGCAATTGATCCAACTGTCACTCCCTATGACTCGAGCATCATTTTCTTTTACAAGACTTGGGACCCTTATGGTGCATTCTCAAATTTTTCCCCTCATGCAATTGAAATGCCTGATGACAATGGTGACTATAACACCTGGCCGAGTGTAGAGCATTATTACCAGGCTAACAAGTTCATAGGAGTGAATGATTCCACGGAACGAGATTGTGTGGAGAAGATAAAATCTGCAAGAAGTCCAGAGGAAGCAGCTCGGGTAGGAAGGTCAATGCAGAGACAACACCCCGACCTGGTGAGATCTGATTGGGAAAGTGTCAAGATAAAAGTTATGTACAGGGCTTTGAAGTGCAAATTTTCAATTTATCCACATTTGAATTCTATTCTACTCTCAACTGCCGGGTCCATTCTAGTTGAAGCATCTCCACACGATCTCTTTTGGGGTGGAGGCCGGGATGGAGAGGGTTTGAATTATCTCGGAAGGCTATTAATGCAACTGAGGTCCGAGTTTCTCGGTGAGTCCTCCTCCTCAAGCCGGAGCACCTACTTAGCTGAACTATAA 1794 46.71 MAFSLRAHPCPIVYKVVNSSSSSSSSSTSHAPESLYIRRAAEIADKSAGLTSPHPNFGCVIATSTGSVAGEGFLYAQGTKCAELQAVEEAGELCRGATAFVNLEPGDCHGDHTAVSALVQAGITRVVVGLRHPLQHLRGSAVRALRSQGLQVDVLGEDIKSKCIEEARQSCLSVNAPLIFRAASGVPFSVLKYAMTLDGKIAATSGHAAWISSKKSRYRVFELRGRSDAVIVGGNTVRRDNPRLTARHGGAHMPVRIVMTRTLDLPEEAHLWDVSDVPTLVVTQRGARRSFQKFLASKGVEVIEFDILNTRDVMEYFHDRGYLSILWECGGTLAASAISSGVIHKVFAFVAPKIIGGKNAPSPVGELGMVEMSQALDLIEVQYEQVGPDMLISGFLQPIPDITPVIPSIDETFAIDPTVTPYDSSIIFFYKTWDPYGAFSNFSPHAIEMPDDNGDYNTWPSVEHYYQANKFIGVNDSTERDCVEKIKSARSPEEAARVGRSMQRQHPDLVRSDWESVKIKVMYRALKCKFSIYPHLNSILLSTAGSILVEASPHDLFWGGGRDGEGLNYLGRLLMQLRSEFLGESSSSSRSTYLAEL 597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57967179 57971042 + Conep01aG0176400.1 Cone1ag1701 432392

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1701 597 SUPERFAMILY YbiA-like 414 583 IPR037238 -
Cone1ag1701 597 FunFam Swarming motility protein ybiA 420 585 - -
Cone1ag1701 597 CDD Riboflavin_deaminase-reductase 37 149 - -
Cone1ag1701 597 Gene3D Cytidine Deaminase, domain 2 29 163 - -
Cone1ag1701 597 Gene3D - 418 589 IPR037238 -
Cone1ag1701 597 PANTHER DIHYDROFOLATE REDUCTASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_8G06820) 187 397 IPR050765 -
Cone1ag1701 597 CDD NADAR 425 579 IPR012816 -
Cone1ag1701 597 Gene3D Dihydrofolate Reductase, subunit A 179 395 IPR024072 -
Cone1ag1701 597 SUPERFAMILY Dihydrofolate reductase-like 185 393 IPR024072 -
Cone1ag1701 597 FunFam Riboflavin biosynthesis protein PYRR, chloroplastic 23 162 - -
Cone1ag1701 597 Pfam RibD C-terminal domain 188 391 IPR002734 GO:0008703(InterPro)|GO:0009231(InterPro)
Cone1ag1701 597 NCBIfam bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD 38 391 IPR004794 GO:0008835(InterPro)|GO:0009231(InterPro)
Cone1ag1701 597 NCBIfam conserved hypothetical protein 427 580 IPR012816 -
Cone1ag1701 597 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 31 153 IPR002125 -
Cone1ag1701 597 Pfam NADAR domain 428 581 IPR012816 -
Cone1ag1701 597 NCBIfam riboflavin-specific deaminase C-terminal domain 186 392 IPR011549 GO:0008703(InterPro)|GO:0009231(InterPro)|GO:0050661(InterPro)
Cone1ag1701 597 SUPERFAMILY Cytidine deaminase-like 35 154 IPR016193 GO:0003824(InterPro)
Cone1ag1701 597 Pfam Cytidine and deoxycytidylate deaminase zinc-binding region 35 129 IPR002125 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1701 K11752 - - vvi:100264997 973.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g872 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag1701 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla03g01013 Cam03g1067 Cec03g1064 Cco03g1059 Clacu03g1038 Cmu03g1628 Cre03g1329 Lsi06g00691 . Chy02g00677 Cme02g00904
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003622 1 2 1 1 1 1 2 1 1 2 1 1 2 2 2 2 1 1 1 1 1 1 1 3 2 2 2 2 5 1 47