Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1702 ATGGGGTCCTGTTTATCAGCCGAATCTAGGAGCCCTGTACCTGGCTCGCCGGTATCTCCTTCCCTCAGATTCAAGAAGAGGAAAAATTCCAAGAAAAAGTTGGGGTCGAGAAATTCTTCCTTTGATCACAGAAAAGAAGATCGGCTTCATCGAATTCCAGGGAGGATGTGCTTAAATGGTTCTAGTGAGGTTGCTGCTATGTTTACTCAACAGGGCAGGAAAGGGACTAATCAAGATGCCATGCTTGTCTGGGAGAATTTTGGCTCTAGAACAGACACAGTCTTCTGCGGAGTTTTTGATGGCCATGGTCCTTATGGTCATATGGTTGCAAAGAGGGTGAGGGATTCTCTTCCACTGAAACTGAGTGCACATTGGGAAGTCAATGCAACCAATGACGATAGTTGTAGAGAAAGTGGACTTAATACAGGAAGCATGAACTCTGAAGATACCGCTTTTATATCTGCTGATGAAGATTCTAGAATCTCAATGGAAAGTGAGGAAGCAGATATGCGCCCGGATTTCTTTCAGACAGTAAAAGAGTCATTTTTGAAGGCTTGCAAAGTGATGGACAGGGAATTGAGGATGAACCAAAGCATTGATTGCTTCTGTAGTGGGACTACAGCAGTAACTCTGGTTAAGCAGGGCCGAGATCTTGTTGTGGGAAATGTTGGGGACTCCAGAGCTGTACTGGGCACACGAGATGAAGATGATTCTCTTATTGCAGTTCAGTTGACCGTAGATCTCAAGCCAAATCTTCCAGCTGAAGCAGAGAGAATCCGTAAATGTAGAGGCCGCGTTTTTGCTCTTCAAGACGAACCTGAAGTTGCTCGTGTTTGGTTGCCAAATTGTGATTCACCCGGACTTGCCATGGCTCGGGCCTTTGGGGATTTCTGCCTCAAGGATTTCGGCCTCATCTCCGTTCCTGAAATGTCTTACCGACGCCTAACTGACAAGGATGAATTCATTGTCTTGGCTACAGATGGAATTTGGGATGTTCTGTCGAATAAAGAGGTAGTAGACATTGTAGCATCGGCCTCAGCTCATTCACATGCAGCTAGAGGGCTGGTTGAGTTTGCAATTAGAGCGTGGAAATGTAAATACCCAACTTCCAAGATCGATGATTGTGCTGTGGTTTGTCTCTTTCTGGGCTCCAATTCGAATGGTTTGTCATCTTATGCTGCTTCTGGTACCAAAGTCAAGGAGCAGATTATTACATCGGACGGAATGAATTCTACCACTACCATTGAGAATGAAAATGTTCCTGATCTCAAAGGTCCTGATCGTCTGGGAACTGTTAGAGAGATTCTCCAGGAAGAAAGTGAAGGAGAGTCGTTGATTGAGGAGGAACCGCACATAGAGGTGGGAACAGAGTGGTCTGCTCTGGAAGGAGTGTCTCGTGTCAACACGCTAATAAATCTGCCTAGGTTTGTCCCTGGAAGGAATGAAAAGAAGGCGCAGTGA 1461 45.65 MGSCLSAESRSPVPGSPVSPSLRFKKRKNSKKKLGSRNSSFDHRKEDRLHRIPGRMCLNGSSEVAAMFTQQGRKGTNQDAMLVWENFGSRTDTVFCGVFDGHGPYGHMVAKRVRDSLPLKLSAHWEVNATNDDSCRESGLNTGSMNSEDTAFISADEDSRISMESEEADMRPDFFQTVKESFLKACKVMDRELRMNQSIDCFCSGTTAVTLVKQGRDLVVGNVGDSRAVLGTRDEDDSLIAVQLTVDLKPNLPAEAERIRKCRGRVFALQDEPEVARVWLPNCDSPGLAMARAFGDFCLKDFGLISVPEMSYRRLTDKDEFIVLATDGIWDVLSNKEVVDIVASASAHSHAARGLVEFAIRAWKCKYPTSKIDDCAVVCLFLGSNSNGLSSYAASGTKVKEQIITSDGMNSTTTIENENVPDLKGPDRLGTVREILQEESEGESLIEEEPHIEVGTEWSALEGVSRVNTLINLPRFVPGRNEKKAQ 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57974327 57978309 + Conep01aG0176500.1 Cone1ag1702 432393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1702 486 ProSiteProfiles PPM-type phosphatase domain profile. 64 382 IPR001932 -
Cone1ag1702 486 Gene3D - 59 383 IPR036457 -
Cone1ag1702 486 SMART PP2C_4 53 380 IPR001932 -
Cone1ag1702 486 MobiDBLite consensus disorder prediction 1 48 - -
Cone1ag1702 486 MobiDBLite consensus disorder prediction 1 16 - -
Cone1ag1702 486 CDD PP2Cc 64 382 IPR001932 -
Cone1ag1702 486 FunFam probable protein phosphatase 2C 33 59 385 - -
Cone1ag1702 486 SUPERFAMILY PP2C-like 61 383 IPR036457 -
Cone1ag1702 486 PANTHER PROTEIN PHOSPHATASE 45 381 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cone1ag1702 486 Pfam Protein phosphatase 2C 173 361 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0799 Cone-Chr10:4059328 Cone1ag1702 Cone-Chr1:57974327 3.73E-108 dispersed
Cone10ag1329 Cone-Chr10:10363256 Cone1ag1702 Cone-Chr1:57974327 2.57E-141 dispersed
Cone13ag1431 Cone-Chr13:10263933 Cone1ag1702 Cone-Chr1:57974327 3.83E-56 dispersed
Cone14ag0667 Cone-Chr14:3439058 Cone1ag1702 Cone-Chr1:57974327 2.14E-141 dispersed
Cone14ag0746 Cone-Chr14:4163280 Cone1ag1702 Cone-Chr1:57974327 1.54E-98 dispersed
Cone15ag0676 Cone-Chr15:3648238 Cone1ag1702 Cone-Chr1:57974327 8.06E-93 dispersed
Cone19ag1428 Cone-Chr19:9298017 Cone1ag1702 Cone-Chr1:57974327 4.39E-110 dispersed
Cone1ag1702 Cone-Chr1:57974327 Cone3ag1401 Cone-Chr3:32875962 1.49E-140 dispersed
Cone1ag1702 Cone-Chr1:57974327 Cone5ag0943 Cone-Chr5:4036801 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1702 - - - 0.0