Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1718 ATGGCGGGTAACTCAGGAAAGGGGTCAATGGATGATTTCTTGGAGCAAATTTTGGGAGAGAGTGGTGGTGGTGGTGGGTATGGTGGAGGAGGTGGAATGATGAATATGAATATGAATATGAATACGGTGTTGCAGCTTGTATCTGGCGGCGCCGACGGTGGTTCTGATGGTGGTGGTGGTTTGAGAGGAGGGTTTGGGATTCAGGGGATGAGGAGTATGGGCATGAATTTAGAACAACAGGGGTTTCCTGATAACACTGCTGCCACCACCACCAACAATGATAACATTATTGCAAGAGATTCAGTCCATATGAGGAGTTTGTTTCCGACGTTCGGAGACCTACAGACTCATCAGTCTATCTGCCCAACCGTGCCACCTCCCCAGTTCCATCAGTCTTATCATAGCCAGCAGCCAACATCCGGGGCAGGTGTTGGACTCCACCCACCATCCATTCGTCCAAGGGTGCGAGCAAGACGTGGGCAAGCAACGGATCCTCATAGTATTGCAGAACGGTTACGCCGTGAAAGAATCGCCGAAAGAATGAAAGCTCTGCAGGAGTTGGTCCCTAGTGCCAACAAGACAGATAGGGCGGCCATGCTGGATGAAATTGTGGATTATGTGAAGTTCCTAAGGCTCCAAGTTAAGGTTTTGAGCATGAGTCGACTGGGTGGAGCTGGTGTGGTGGCTCAGCTTGTAGCTGATGTTCCCTTATCATCGGTCGAGGGGATTGAAGGTGGAAACCATGAGCAAGCTTGGGAAAAGTGGTCAACAGATGGGACGGAGCAGCAAGTGGCTAACTTGATGGAAGAAGACGTAGGCACGGCCATGCAATTTCTTCAGTCCAAGGCTCTATGCATTATGCCCATATCACTAGCCTCTGTCATTTTCCCTACATGCCAACCGGATACTACACAAACAAGAATGGTCAAGTCGGAATTTGATGTTCTGTCGTAG 954 49.69 MAGNSGKGSMDDFLEQILGESGGGGGYGGGGGMMNMNMNMNTVLQLVSGGADGGSDGGGGLRGGFGIQGMRSMGMNLEQQGFPDNTAATTTNNDNIIARDSVHMRSLFPTFGDLQTHQSICPTVPPPQFHQSYHSQQPTSGAGVGLHPPSIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSANKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGVVAQLVADVPLSSVEGIEGGNHEQAWEKWSTDGTEQQVANLMEEDVGTAMQFLQSKALCIMPISLASVIFPTCQPDTTQTRMVKSEFDVLS 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 58034294 58037082 - Conep01aG0178100.1 Cone1ag1718 432409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1718 317 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 159 220 IPR036638 GO:0046983(InterPro)
Cone1ag1718 317 SMART finulus 167 216 IPR011598 GO:0046983(InterPro)
Cone1ag1718 317 MobiDBLite consensus disorder prediction 129 143 - -
Cone1ag1718 317 FunFam Transcription factor bHLH66 158 223 - -
Cone1ag1718 317 MobiDBLite consensus disorder prediction 129 165 - -
Cone1ag1718 317 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 80 292 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cone1ag1718 317 Pfam Helix-loop-helix DNA-binding domain 166 211 IPR011598 GO:0046983(InterPro)
Cone1ag1718 317 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 210 IPR011598 GO:0046983(InterPro)
Cone1ag1718 317 Gene3D - 156 218 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1718 Cone-Chr1:58034294 Cone20ag0823 Cone-Chr20:5833869 3.00E-79 dispersed
Cone1ag1718 Cone-Chr1:58034294 Cone10ag0673 Cone-Chr10:3253192 6.78E-104 wgd
Cone1ag1718 Cone-Chr1:58034294 Cone3ag0699 Cone-Chr3:3570636 3.90E-62 wgd
Cone1ag1718 Cone-Chr1:58034294 Cone5ag0543 Cone-Chr5:2302543 3.46E-166 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45540 PF01728 FtsJ 9.40E-17 CL0063 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1718 - - - 0.0