Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone1ag1718 | ATGGCGGGTAACTCAGGAAAGGGGTCAATGGATGATTTCTTGGAGCAAATTTTGGGAGAGAGTGGTGGTGGTGGTGGGTATGGTGGAGGAGGTGGAATGATGAATATGAATATGAATATGAATACGGTGTTGCAGCTTGTATCTGGCGGCGCCGACGGTGGTTCTGATGGTGGTGGTGGTTTGAGAGGAGGGTTTGGGATTCAGGGGATGAGGAGTATGGGCATGAATTTAGAACAACAGGGGTTTCCTGATAACACTGCTGCCACCACCACCAACAATGATAACATTATTGCAAGAGATTCAGTCCATATGAGGAGTTTGTTTCCGACGTTCGGAGACCTACAGACTCATCAGTCTATCTGCCCAACCGTGCCACCTCCCCAGTTCCATCAGTCTTATCATAGCCAGCAGCCAACATCCGGGGCAGGTGTTGGACTCCACCCACCATCCATTCGTCCAAGGGTGCGAGCAAGACGTGGGCAAGCAACGGATCCTCATAGTATTGCAGAACGGTTACGCCGTGAAAGAATCGCCGAAAGAATGAAAGCTCTGCAGGAGTTGGTCCCTAGTGCCAACAAGACAGATAGGGCGGCCATGCTGGATGAAATTGTGGATTATGTGAAGTTCCTAAGGCTCCAAGTTAAGGTTTTGAGCATGAGTCGACTGGGTGGAGCTGGTGTGGTGGCTCAGCTTGTAGCTGATGTTCCCTTATCATCGGTCGAGGGGATTGAAGGTGGAAACCATGAGCAAGCTTGGGAAAAGTGGTCAACAGATGGGACGGAGCAGCAAGTGGCTAACTTGATGGAAGAAGACGTAGGCACGGCCATGCAATTTCTTCAGTCCAAGGCTCTATGCATTATGCCCATATCACTAGCCTCTGTCATTTTCCCTACATGCCAACCGGATACTACACAAACAAGAATGGTCAAGTCGGAATTTGATGTTCTGTCGTAG | 954 | 49.69 | MAGNSGKGSMDDFLEQILGESGGGGGYGGGGGMMNMNMNMNTVLQLVSGGADGGSDGGGGLRGGFGIQGMRSMGMNLEQQGFPDNTAATTTNNDNIIARDSVHMRSLFPTFGDLQTHQSICPTVPPPQFHQSYHSQQPTSGAGVGLHPPSIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSANKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGVVAQLVADVPLSSVEGIEGGNHEQAWEKWSTDGTEQQVANLMEEDVGTAMQFLQSKALCIMPISLASVIFPTCQPDTTQTRMVKSEFDVLS | 317 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 58034294 | 58037082 | - | Conep01aG0178100.1 | Cone1ag1718 | 432409 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone1ag1718 | 317 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 159 | 220 | IPR036638 | GO:0046983(InterPro) | |
Cone1ag1718 | 317 | SMART | finulus | 167 | 216 | IPR011598 | GO:0046983(InterPro) | |
Cone1ag1718 | 317 | MobiDBLite | consensus disorder prediction | 129 | 143 | - | - | |
Cone1ag1718 | 317 | FunFam | Transcription factor bHLH66 | 158 | 223 | - | - | |
Cone1ag1718 | 317 | MobiDBLite | consensus disorder prediction | 129 | 165 | - | - | |
Cone1ag1718 | 317 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 80 | 292 | IPR045843 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER) | |
Cone1ag1718 | 317 | Pfam | Helix-loop-helix DNA-binding domain | 166 | 211 | IPR011598 | GO:0046983(InterPro) | |
Cone1ag1718 | 317 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 161 | 210 | IPR011598 | GO:0046983(InterPro) | |
Cone1ag1718 | 317 | Gene3D | - | 156 | 218 | IPR036638 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone1ag1718 | Cone-Chr1:58034294 | Cone20ag0823 | Cone-Chr20:5833869 | 3.00E-79 | dispersed | |
Cone1ag1718 | Cone-Chr1:58034294 | Cone10ag0673 | Cone-Chr10:3253192 | 6.78E-104 | wgd | |
Cone1ag1718 | Cone-Chr1:58034294 | Cone3ag0699 | Cone-Chr3:3570636 | 3.90E-62 | wgd | |
Cone1ag1718 | Cone-Chr1:58034294 | Cone5ag0543 | Cone-Chr5:2302543 | 3.46E-166 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45540 | PF01728 | FtsJ | 9.40E-17 | CL0063 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone1ag1718 | - | - | - | 0.0 |