Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1738 ATGGGGTGTGTTTTCAGCCGTGAGGCATCCTCAAGAAGTGTAGAAGCTTCTGAGGATAAGACGGGAAATGAGACGGGAAATGAATCTAATAAGAAGGAAGAAAATGGTGTTTTGGAAAATAAGGTTGAGAAGATAGATGGTAATGTGGCCGAAGAGCAAAATGGTGCCTCTCAAGACGAGGAGAAGGCTGATGAGCGCCAGCATGTGGCCCGGGGAGAGAGACGAAAGTCAAAGACACGGCCTAGGCCTAGAAACTTTCCGAAACAATCGAGGGGAGAACAGGTGGCAGCTGGATGGCCTTCTTGGCTAACTGGAGTTTGTGGGGAGGCACTCAATGGTTGGCTTCCAAGGAAAGCGGACACTTTTGAAAAAATCGATAAGATTGGACAAGGAACATATAGTAACGTGTACAAAGCTAAAGATATGCTGACTGGAAAAATTGTCGCACTAAAGAAGGTTCGATTCGACAATTTAGAACCCGAGAGTGTAAGATTCATGGCTAGGGAGATTCTCATTCTGCGGCAATTAGATCATCCTAATGTTGTAAAGTTGGAAGGTTTGGTCACATCAAGGATGTCTTGTAGTTTATACCTTGTCTTTGAGTACATGGAGCATGATTTAGCTGGACTCGCTGCTAACCCAGATATCAAATTCACTGAACCACAGGTCAAGTGTTTTATGCAACAGCTGTTATCTGGGCTAGAACATTGTCACAACTGTAGAGTTCTTCACCGTGATATTAAAGGATCTAATCTTCTCATTGATGGTGGAGGAGTTCTTAAAATTGCTGACTTTGGACTTGCTTCTTTCTTTGATCCGAACCATAAACACCCCATGACTAGCCGTGTAGTTACCTTGTGGTACCGCCCACCAGAGCTTCTTCTTGGGGCTACTGATTATGGTGTGGGTGTAGACCTTTGGAGTGCTGGTTGTATTTTAGCCGAGTTATTAGCCGGCAGACCCATTATGCCTGGCCGTACTGAGGTAGAGCAACTACATAAAATTTACAAGCTTTGTGGGTCCCCCTCGGAAGAATACTGGAAAAGAGCAAAATTACCAAATGCAACCTTATATAAACCAAGGCAGCCTTACAAAAGATGTATAAAAGAGACATTTAAGGATTTCCCGCCATCATCACTGCCTCTTATAGAAACTCTTCTTGCAATTGATCCAGCAGAGCGCAAGACAGCAACAGCCGCATTAAAAAGTGAGTTCTTCACTACAGAACCTTATGCTTGTGAACCTTCTGACCTACCGAAGTATCCTCCAAGCAAGGAGATAGATGCTAAAAGACGGGATGATGAAGCTAGGAAGCTAAGAGCTGCTAATAAAGCACAAGGTGATAGTGTAAAGAAACCTCGGAAAGAACGAGCTGCGAAAGCTGTTCCTGCCCCGGAAGCCAATGCAGAAATACAATCGAACATTGATAGGAGACGCCTTATTACACATGCAAATGCAAAGAGCAAGAGCGAAAAATTCCCTCCACCACACCAAGACGGCGCGGTTGGGTTTCGGTTAGGATTTTCTCGTCATATAGATCCTGCTGCTGTTCCCACAGATGTTCCATTCAGCTCAAGCTCATTCAGCTATTCTCATGATCCGGGTCAAGCATGGTCCGGCCCACTGGTTGAACCGTCTAGTGTCGGCCCAACGAGAAAATCCCGAGAGCCGTCAAAACTATCCAGAAGTGGTGATGCTATGTTAAAAGGAAAGAGAATTATGATTCGTTGA 1731 44.77 MGCVFSREASSRSVEASEDKTGNETGNESNKKEENGVLENKVEKIDGNVAEEQNGASQDEEKADERQHVARGERRKSKTRPRPRNFPKQSRGEQVAAGWPSWLTGVCGEALNGWLPRKADTFEKIDKIGQGTYSNVYKAKDMLTGKIVALKKVRFDNLEPESVRFMAREILILRQLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAANPDIKFTEPQVKCFMQQLLSGLEHCHNCRVLHRDIKGSNLLIDGGGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGRPIMPGRTEVEQLHKIYKLCGSPSEEYWKRAKLPNATLYKPRQPYKRCIKETFKDFPPSSLPLIETLLAIDPAERKTATAALKSEFFTTEPYACEPSDLPKYPPSKEIDAKRRDDEARKLRAANKAQGDSVKKPRKERAAKAVPAPEANAEIQSNIDRRRLITHANAKSKSEKFPPPHQDGAVGFRLGFSRHIDPAAVPTDVPFSSSSFSYSHDPGQAWSGPLVEPSSVGPTRKSREPSKLSRSGDAMLKGKRIMIR 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 58138096 58141850 + Conep01aG0180600.1 Cone1ag1738 432429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1738 576 FunFam probable serine/threonine-protein kinase At1g54610 205 446 - -
Cone1ag1738 576 CDD STKc_CDK9_like 122 406 - -
Cone1ag1738 576 Gene3D Phosphorylase Kinase; domain 1 109 204 - -
Cone1ag1738 576 Gene3D Transferase(Phosphotransferase) domain 1 205 446 - -
Cone1ag1738 576 MobiDBLite consensus disorder prediction 414 478 - -
Cone1ag1738 576 Pfam Protein kinase domain 122 406 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag1738 576 MobiDBLite consensus disorder prediction 1 96 - -
Cone1ag1738 576 MobiDBLite consensus disorder prediction 12 48 - -
Cone1ag1738 576 ProSiteProfiles Protein kinase domain profile. 122 406 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag1738 576 MobiDBLite consensus disorder prediction 55 72 - -
Cone1ag1738 576 FunFam probable serine/threonine-protein kinase At1g54610 109 204 - -
Cone1ag1738 576 PANTHER CELL DIVISION PROTEIN KINASE 121 406 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Cone1ag1738 576 SMART serkin_6 122 406 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag1738 576 ProSitePatterns Protein kinases ATP-binding region signature. 128 151 IPR017441 GO:0005524(InterPro)
Cone1ag1738 576 MobiDBLite consensus disorder prediction 524 576 - -
Cone1ag1738 576 SUPERFAMILY Protein kinase-like (PK-like) 117 411 IPR011009 -
Cone1ag1738 576 ProSitePatterns Serine/Threonine protein kinases active-site signature. 242 254 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone1ag1738 576 MobiDBLite consensus disorder prediction 421 461 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1738 Cone-Chr1:58138096 Cone4ag0174 Cone-Chr4:812123 6.50E-290 dispersed
Cone1ag1738 Cone-Chr1:58138096 Cone5ag0524 Cone-Chr5:2209239 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82523 PF02701 zf-Dof 2.70E-32 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1738 K08819 - csv:101215893 873.618