Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1761 ATGGATCATCATCTGTTGTCATATGGCACAAACCTCTACCAGCCCAACCAGATAACCACCCCCCCAAACCAATCCTCGGTACTGGTCGGACCGAGCCAAACAGGTAGTGGGGCTCAACTCGCACAACACCAGCTTGCATATCAGCAAATCCAACAGCAACAACAACAGCAACTCCAACAACAGCTCCAAAATTTCTGGACAAACCAGTACCAAGAAGTTGAGAAAGTAACCGATTTCAAAAACCATAGTCTTCCCTTAGCAAGGATCAAGAAGATCATGAAAGCTGACGAGGATGTAAGAATGATATCGGCTGAGGCACCCGTCATTTTTGCCAGAGCGTGCGAGATGTTCATATTGGAGTTGACTTTACGGGCTTGGAATCACACGGAGGAGAATAAAAGGAGGACGCTACAGAAGAATGATATTGCAGCAGCGGTCACAAGGACTGATATCTTTGACTTTCTGGTTGACATTGTGCCCAGAGAGGATTTGAAGGATGAAGTACTTGCTTCGATCCCGAGAGGGACAATGCCGGTTGGAGGAGGGAATGTTGATATGATTGGTTACGGATATATGCCAGCTCAGCATGGTGGTGGTCAGGCAGGGAGTTCTGGGATGATGATTGGGGGAAAGTCTATGGTGGACCCGGGAACGTACGGCCCGCAATCTCATGTGTATATGGGTCCGCAGATGTGGCAGCAGCAGTTGGATCAACAGCAAGCTCCTTCCGATCATTAG 738 48.51 MDHHLLSYGTNLYQPNQITTPPNQSSVLVGPSQTGSGAQLAQHQLAYQQIQQQQQQQLQQQLQNFWTNQYQEVEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRAWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVGGGNVDMIGYGYMPAQHGGGQAGSSGMMIGGKSMVDPGTYGPQSHVYMGPQMWQQQLDQQQAPSDH 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 58245827 58246564 - Conep01aG0182900.1 Cone1ag1761 432452

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1761 245 Coils Coil 40 60 - -
Cone1ag1761 245 MobiDBLite consensus disorder prediction 15 35 - -
Cone1ag1761 245 Gene3D Histone, subunit A 45 161 IPR009072 GO:0046982(InterPro)
Cone1ag1761 245 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 59 176 IPR050568 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Cone1ag1761 245 FunFam Nuclear transcription factor Y subunit gamma 48 161 - -
Cone1ag1761 245 Pfam Core histone H2A/H2B/H3/H4 50 146 IPR007125 GO:0003677(InterPro)
Cone1ag1761 245 SUPERFAMILY Histone-fold 51 155 IPR009072 GO:0046982(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1761 K08066 - - gmx:100527803 285.419
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1432 Cone-Chr10:11150110 Cone1ag1761 Cone-Chr1:58245827 2.52E-70 dispersed
Cone1ag1761 Cone-Chr1:58245827 Cone3ag0756 Cone-Chr3:3923223 1.69E-88 dispersed
Cone1ag1761 Cone-Chr1:58245827 Cone10ag0745 Cone-Chr10:3757038 4.49E-93 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone19ag0213 . 36 220 CCAAT-HAP5 Transcription Factor Family AT3G48590 88.5 1.6e-88 323.2
Cone13ag0228 . 36 220 CCAAT-HAP5 Transcription Factor Family AT3G48590 88.0 2.7e-88 322.4
Cone10ag1432 . 72 220 CCAAT-HAP5 Transcription Factor Family AT3G48590 69.1 9.8e-54 207.6
Cone3ag1500 . 72 232 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.2 3.7e-53 205.7
Cone3ag0756 . 71 239 CCAAT-HAP5 Transcription Factor Family AT3G48590 62.9 1.1e-49 194.1
Cone1ag1761 . 62 233 CCAAT-HAP5 Transcription Factor Family AT3G48590 63.0 3.3e-49 192.6
Cone10ag0745 . 79 206 CCAAT-HAP5 Transcription Factor Family AT3G48590 71.9 1.5e-46 183.7
Cone1ag1761 . 6 239 CCAAT-HAP5 Transcription Factor Family AT1G08970 56.2 4.1e-52 202.2
Cone10ag0745 . 1 174 CCAAT-HAP5 Transcription Factor Family AT1G08970 68.0 2.6e-51 199.5
Cone3ag1500 . 22 170 CCAAT-HAP5 Transcription Factor Family AT1G08970 71.1 2.5e-49 193.0
Cone10ag1432 . 22 170 CCAAT-HAP5 Transcription Factor Family AT1G08970 71.8 2.5e-49 193.0
Cone3ag0756 . 1 166 CCAAT-HAP5 Transcription Factor Family AT1G08970 66.3 2.7e-48 189.5
Cone13ag0228 . 36 134 CCAAT-HAP5 Transcription Factor Family AT1G08970 82.8 2.9e-42 169.5
Cone19ag0213 . 36 134 CCAAT-HAP5 Transcription Factor Family AT1G08970 82.8 2.9e-42 169.5
Cone1ag1761 . 6 244 CCAAT-HAP5 Transcription Factor Family AT1G54830 58.2 5.0e-60 228.4
Cone3ag0756 . 70 246 CCAAT-HAP5 Transcription Factor Family AT1G54830 64.4 6.3e-55 211.5
Cone10ag0745 . 1 211 CCAAT-HAP5 Transcription Factor Family AT1G54830 57.8 1.8e-54 209.9
Cone10ag1432 . 22 217 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.7 4.1e-54 208.8
Cone3ag1500 . 22 218 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.4 9.1e-54 207.6
Cone13ag0228 . 36 194 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.3 2.5e-51 199.5
Cone19ag0213 . 36 194 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.3 2.5e-51 199.5
Cone13ag0228 . 41 193 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.5 4.2e-37 152.1
Cone19ag0213 . 41 193 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.5 4.2e-37 152.1
Cone19ag0213 . 36 220 CCAAT-HAP5 Transcription Factor Family AT5G63470 80.4 6.5e-80 294.7
Cone13ag0228 . 36 220 CCAAT-HAP5 Transcription Factor Family AT5G63470 79.9 1.1e-79 293.9
Cone3ag1500 . 72 232 CCAAT-HAP5 Transcription Factor Family AT5G63470 65.4 9.8e-52 201.1
Cone10ag1432 . 72 220 CCAAT-HAP5 Transcription Factor Family AT5G63470 66.9 2.4e-50 196.4
Cone3ag0756 . 71 239 CCAAT-HAP5 Transcription Factor Family AT5G63470 61.2 1.1e-47 187.6
Cone1ag1761 . 62 233 CCAAT-HAP5 Transcription Factor Family AT5G63470 59.5 3.3e-47 186.0
Cone10ag0745 . 79 180 CCAAT-HAP5 Transcription Factor Family AT5G63470 84.3 6.8e-45 178.3
Cone10ag1432 . 33 200 CCAAT-HAP5 Transcription Factor Family AT1G56170 82.2 6.8e-64 241.1
Cone3ag1500 . 47 201 CCAAT-HAP5 Transcription Factor Family AT1G56170 85.9 4.4e-63 238.4
Cone10ag0745 . 50 208 CCAAT-HAP5 Transcription Factor Family AT1G56170 72.0 5.1e-51 198.4
Cone3ag0756 . 71 200 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.6 4.3e-50 195.3
Cone13ag0228 . 36 159 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 5.6e-50 194.9
Cone19ag0213 . 36 159 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 5.6e-50 194.9
Cone1ag1761 . 62 178 CCAAT-HAP5 Transcription Factor Family AT1G56170 80.3 1.2e-49 193.7
Cone1ag0827 . 1 299 CCAAT-HAP5 Transcription Factor Family AT3G12480 52.3 7.2e-62 235.0
Cone5ag0992 . 1 297 CCAAT-HAP5 Transcription Factor Family AT3G12480 53.6 6.1e-61 231.9
Cone12ag0815 . 4 128 CCAAT-HAP5 Transcription Factor Family AT5G43250 64.8 1.9e-38 156.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000741 2 9 3 3 3 2 3 2 2 2 2 2 4 2 2 4 2 5 3 2 2 2 2 2 2 2 1 17 4 2 95
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45543 PF00676 E1_dh 3.90E-63 CL0254 Cone TF