Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone1ag1761 | ATGGATCATCATCTGTTGTCATATGGCACAAACCTCTACCAGCCCAACCAGATAACCACCCCCCCAAACCAATCCTCGGTACTGGTCGGACCGAGCCAAACAGGTAGTGGGGCTCAACTCGCACAACACCAGCTTGCATATCAGCAAATCCAACAGCAACAACAACAGCAACTCCAACAACAGCTCCAAAATTTCTGGACAAACCAGTACCAAGAAGTTGAGAAAGTAACCGATTTCAAAAACCATAGTCTTCCCTTAGCAAGGATCAAGAAGATCATGAAAGCTGACGAGGATGTAAGAATGATATCGGCTGAGGCACCCGTCATTTTTGCCAGAGCGTGCGAGATGTTCATATTGGAGTTGACTTTACGGGCTTGGAATCACACGGAGGAGAATAAAAGGAGGACGCTACAGAAGAATGATATTGCAGCAGCGGTCACAAGGACTGATATCTTTGACTTTCTGGTTGACATTGTGCCCAGAGAGGATTTGAAGGATGAAGTACTTGCTTCGATCCCGAGAGGGACAATGCCGGTTGGAGGAGGGAATGTTGATATGATTGGTTACGGATATATGCCAGCTCAGCATGGTGGTGGTCAGGCAGGGAGTTCTGGGATGATGATTGGGGGAAAGTCTATGGTGGACCCGGGAACGTACGGCCCGCAATCTCATGTGTATATGGGTCCGCAGATGTGGCAGCAGCAGTTGGATCAACAGCAAGCTCCTTCCGATCATTAG | 738 | 48.51 | MDHHLLSYGTNLYQPNQITTPPNQSSVLVGPSQTGSGAQLAQHQLAYQQIQQQQQQQLQQQLQNFWTNQYQEVEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRAWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVGGGNVDMIGYGYMPAQHGGGQAGSSGMMIGGKSMVDPGTYGPQSHVYMGPQMWQQQLDQQQAPSDH | 245 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 58245827 | 58246564 | - | Conep01aG0182900.1 | Cone1ag1761 | 432452 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone1ag1761 | 245 | Coils | Coil | 40 | 60 | - | - | |
| Cone1ag1761 | 245 | MobiDBLite | consensus disorder prediction | 15 | 35 | - | - | |
| Cone1ag1761 | 245 | Gene3D | Histone, subunit A | 45 | 161 | IPR009072 | GO:0046982(InterPro) | |
| Cone1ag1761 | 245 | PANTHER | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | 59 | 176 | IPR050568 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER) | |
| Cone1ag1761 | 245 | FunFam | Nuclear transcription factor Y subunit gamma | 48 | 161 | - | - | |
| Cone1ag1761 | 245 | Pfam | Core histone H2A/H2B/H3/H4 | 50 | 146 | IPR007125 | GO:0003677(InterPro) | |
| Cone1ag1761 | 245 | SUPERFAMILY | Histone-fold | 51 | 155 | IPR009072 | GO:0046982(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone10ag1432 | Cone-Chr10:11150110 | Cone1ag1761 | Cone-Chr1:58245827 | 2.52E-70 | dispersed | |
| Cone1ag1761 | Cone-Chr1:58245827 | Cone3ag0756 | Cone-Chr3:3923223 | 1.69E-88 | dispersed | |
| Cone1ag1761 | Cone-Chr1:58245827 | Cone10ag0745 | Cone-Chr10:3757038 | 4.49E-93 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 45543 | PF00676 | E1_dh | 3.90E-63 | CL0254 | Cone | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone1ag1761 | K08066 | - | gmx:100527803 | 285.419 |