Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone1ag1776 | ATGACTGCAGTGTTGAGCTATGCTGTGTCAAGATTGCAAATGTTATCCACTTCTGATCATTCCTCTGTGGTTTCCATGAACTTATTTGTAGCACTCCTTTGTGCTTGTATTGTGATTGGTCATCTTCTCGAGGAGAATCGATGGGTTAATGAATCGATCACTGCCCTCTTGATTGGTCTGTGTACTGGAATTGTCATATTGTTGATCAGTGGAGGAAAGAGTTCACACATATTAGTCTTTAGTGAAGATCTTTTCTTTATTTATCTTCTGCCTCCTATTATATTCAATGCTGGGTTTCAGGTGAAGAAGAAGCAGTTTTTTGTTAACTTTATCACAATCATGATGTTTGGCGCCATTGGTACATTGATCTCCTGTTCCATTATATCTCTAGGTGTCAAGCAGTTCTTCAAGAAAATGGATATTGGTTCACTGGAGATTGGAGACTATCTTGCGATTGGGGCAATATTTGCTGCTACAGATTCTGTCTGCACATTGCAGATTCTCAATCAGGATGAGACACCTTTACTCTACAGTCTTGTTTTTGGGGAGGGTGTAGTCAACGATGCTACATCTGTGGTGCTTTTCAATGCAATTCAGAGCTTTGATCTCACTAATATCAATCCGAGAACTGCTTTACAGTTTGCTGGAAACTTCTTTTATTTGTTTTTTACAAGTACTATTCTTGGAGTATTTGCTGGGCTGCTCAGTGCTTATATTATTAAAAAGCTTTACATGGGGAGGCACTCTACAGATCGTGAGGTTGCTCTTATGATACTCATGGCATACCTTTCATATATGCTGGCAGAATTATTCTATCTGAGTGGTATTCTCACAGTGTTCTTTTGCGGGATTGTAATGTCTCATTACACCTGGCACAATGTCACGGAGAGTTCAAGAATCACCACCAAGCATGCTTTTGCTACCTTGTCTTTTATTGCTGAGATTTTCATCTTCCTTTATGTTGGTATGGACGCAATGGATATAGAGAAATGGAGATTTGTTAGTGATAGTCCTGGGACATCAGTGGGTGTGAGTTCAATATTGATAGGGCTGGTTATGGCTGGAAGAGCAGCTTTTGTTTTTCCCTTATCATTTTTGTCCAACTTATCCAAAAAGAACCCTGCAGATAAAATCAGCATAAGACAGCAAGTTATAATATGGTGGGCTGGTCTCATGAGAGGCGCTGTCTCAATAGCACTTGCTTACAATCAGTTCACGAGATTAGGGCATACTCAACTGCGAGCTAATGCAATCATGATCACCAGTACCATAACTGTTGTTCTTTTCAGCACAGTGGTGTTCGGATTATTGACCAAGCCTCTTATAAGGTTCTTACGGCCTCAACAAAAACACAGCACCAGCACAATATTATCTGATCCATCAACACCAAAATCATTCATCATTCCTCTTCTCGGACAAGAATCTGAACAGGATCTTGTTCTCCCTGACATCCGCCGGCCAGGCAGCATCCGGGATCTCCTAACGACCCCAACACATACCGTCCATAGGTACTGGCGTAGATTTGACAATGCTTTCATGCGTCCAGTGTTTGGGGGCCGGGGTTTTGTTCCCTTTGTTCCCGGATCACCTACCGAAAGGAGTGCCCATGAAAGAGAATGA | 1620 | 41.67 | MTAVLSYAVSRLQMLSTSDHSSVVSMNLFVALLCACIVIGHLLEENRWVNESITALLIGLCTGIVILLISGGKSSHILVFSEDLFFIYLLPPIIFNAGFQVKKKQFFVNFITIMMFGAIGTLISCSIISLGVKQFFKKMDIGSLEIGDYLAIGAIFAATDSVCTLQILNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLTNINPRTALQFAGNFFYLFFTSTILGVFAGLLSAYIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRITTKHAFATLSFIAEIFIFLYVGMDAMDIEKWRFVSDSPGTSVGVSSILIGLVMAGRAAFVFPLSFLSNLSKKNPADKISIRQQVIIWWAGLMRGAVSIALAYNQFTRLGHTQLRANAIMITSTITVVLFSTVVFGLLTKPLIRFLRPQQKHSTSTILSDPSTPKSFIIPLLGQESEQDLVLPDIRRPGSIRDLLTTPTHTVHRYWRRFDNAFMRPVFGGRGFVPFVPGSPTERSAHERE | 539 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 58371527 | 58376855 | - | Conep01aG0184400.1 | Cone1ag1776 | 432467 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone1ag1776 | 539 | PANTHER | SODIUM/HYDROGEN EXCHANGER | 15 | 531 | IPR018422 | GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(PANTHER)|GO:0015385(InterPro)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0090333(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro) | |
| Cone1ag1776 | 539 | Pfam | Sodium/hydrogen exchanger family | 31 | 442 | IPR006153 | GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro) | |
| Cone1ag1776 | 539 | Gene3D | - | 145 | 197 | - | - | |
| Cone1ag1776 | 539 | PRINTS | Na+/H+ exchanger signature | 113 | 121 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone1ag1776 | 539 | PRINTS | Na+/H+ exchanger signature | 153 | 163 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone1ag1776 | 539 | PRINTS | Na+/H+ exchanger signature | 84 | 95 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone1ag1776 | 539 | PRINTS | Na+/H+ exchanger signature | 98 | 112 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone1ag1776 | 539 | NCBIfam | sodium/hydrogen exchanger 3 | 24 | 462 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone17ag0478 | Cone-Chr17:2302988 | Cone1ag1776 | Cone-Chr1:58371527 | 1.88E-113 | dispersed | |
| Cone1ag1776 | Cone-Chr1:58371527 | Cone7ag0181 | Cone-Chr7:761678 | 3.10E-277 | dispersed | |
| Cone10ag0726 | Cone-Chr10:3683927 | Cone1ag1776 | Cone-Chr1:58371527 | 1.56E-224 | transposed | |
| Cone1ag1776 | Cone-Chr1:58371527 | Cone5ag0001 | Cone-Chr5:14717 | 5.17E-279 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone1ag1776 | - | - | - | 0.0 |