Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0003 ATGGAGTTAGACGTAGCTGCAAGCAGAGGACAGAAGTGCGACGTAGCAGCGGCGGTTTCAGGGTTTAGCGACGCATCTCAGGCCGTGCACGGTTCGGAGGAATATGAACTTAAGGAGGGAACCAATACCGTTCTGATAAATGAACTGCACGAAGCTGTGAATGCTCATCCGGAGGACCCCTCACTTCATTTTGATCTTGGACTCTTCTTGTGGGAAAAAGGGCCAAACTCCAAGGAAAACAAGGAAAGGGCAGCGAACCATTTCCTAACATCAGCCAAGTTAAATCCTCAGAATGGAGCAGCTTTCAGATATCTTGGTCACTATTATGCCTCCCTTTCACTCGATATGCAGAGGGCTCTTAAGTGTTACCAGAGAGCAGTCACTCTCAATCCTGATGATTCGCTTTCTGGGGAAGCCCTCTGTGATTTGTTGGACCAAGGAGGGAAGGAAATAATGCAAGTATCAGTATGCAGAGAAGCTTCAGGGAAGTCTCCTAGAGCTTTTTGGGCTTTTCGAAGATTGGGTTACTTGCAGGTTCATCAAAAGAAATGGTCTGCAGCTGTCCAGAGTCTTCAACATGCTATCCGGGGTTATCCTAACTGTTGTGATTTGTGGGAAGCATTGGGTCTTGCCTACCAGCGGCTTGGCAGGTTTACTGCTGCTATTAAGTCCTATGGACGGGCCATTGAACTGGAAGATACCAGCATTTTTGCTTCGATTGAAAGTGGAAATATCTTCTTGATGCTTGGTTCTTTCAGAAAAGGAGTTGAGAAATTTCAACACGCTTTAGAGATATCGCCTCAGAACATCGCTGCTCAATTTGGGGTCTCGTTTGGGTTGCTTTGTTTGGCAAAAGAATGTATCCAGCTGGGAGCATTTATATGGGCATCTTCACTATTGGAGGAAGCATCGCAAGTTGCAGAAGCAAGTACTCGTCTGGCTGGAAATCTCTCATGTTTGTGGAAGTTGCATGGTGATATCCAACTTTTGTATGCAAAATGTTTCCCATGGATGGACAAAAGTGGGGGTCTAGAAAGGGATGTGGTAGCTTTCAACGCTTCTATCCTTTCCTGGAAGAAAACTTGCACTTTGGCTGCCATATCTGCCAGCTGCTCATATCAACGAGCTTTGCGCCTGGCTCCGTGGCAAGCTAATATCTACACTGATATTGCAATTGCTTCAGATCTTACATCTCATTTGAACAGCGGCCTTGGACCGGATGCGGATATATGGAAGCTGCCAGAGAAGCTGGCTTTGGGGTCCTTGTTACTTGAGGGTGACAACTATGATTTCTGGGTGGCATTAGGATATCTATCCCACAATAATGCATTGAAACAACATGCTCTAATAAGGGGGTTGCAGTTGGATGTTGCTCTAGCTTTTGCTTGGGCACATCTTGGGAAGCTATATAGAAACATGGATGAGAAGCAATTGGCAAGGCAGGCATTTGATTGTGCTAGGAGTATAGATCCTTCACTTGCAATACCATGGGCAGGCATGTCAGCGGACTTTGACGTTATGGAGTCAACTTCAGATGAGGCGTTTCAGAGCTGTTTATATGCAGTGCAGATATCGCCAATTGCAGAATTTCAAATTGGTCTTGCAAAGCTTGCTCTGCATTCGGGGCAACTTTCATCTTCACAGTTATTTCGAGCCATCTGTCAGGCTGTGCAACTTGCCCCTCACTATCCTGAATCTCATAATTTAAATGGATTAGTTTGTGAGGCACGTCTTGACTATCAATCTGCTGCTACTTCATATAAGCGAGCACGCTGCGCAGTTAACATTTCATCAGACAAGGTTCCCAAGGATCTTACAAGAGATATATCAATAAATTTAGCCAGGTCACTCAGTAAAGTGGGGAATTCCGGAGAAGCTTTGATGGAATGTGAGATTTTGAAGAAAGAAGGCATGCTAGACATAGAAGGTTTGCAATTGTATGCCTTCTCTTTATGGCAAGTTGGTAAAAATGAAGAAGCCCTTTCTGTGGCAAGAAACCTTGCTGGAAGCATTTCTTCTATTGGAGGGACTTCTGTGGCTGCCTCTGTTAGTTTCATCTGTAGATTGCTGTATTCTATATCTGGATTGGATTCAGCAATTATCAGTATTCAGAGAATGCCAAAGAAAATGTTTCAGAGTTCAAAAATTAGTTTAGTTGTGTCAGCTATTCATGCTTTTGATCAGAGTAATCGGCTTGAATCCATTGTTTCAAGCAGCCGTTCCTTCCTCAACTCCCATGAAGAGATCACAAGAATGCACTTCTTGATAGCCCTTAGTAAACTGGTGAAGAATGGATCGGAGTGCTCCCTAGGATTTCAGAGTGGAGTTGCTCACCTTAGAAAGGCTCTTCACATGTACCCTAACAGCAATTTGATAAGGAACCTACTTGGGTATCTTTTGCTCTTCACTGAAGATTCAAATCATTGCCACATGGCTACTAGATGCTGCAAGATGTATGCTTCTAACTATCAGAACCAAGAAGGTGTTAAATGTGCTACTGAGATCCTTGGAGCTGGAGCAGTTGCCTGCTATTCTGTTGGCAATAGCAATCCAAAGTTCTCGTTCCCAACATGTAAGCACCAGTGCCTGAATGACCATGGAGCTGTACGAGAGCTACAAAGATACTTGCATCAGGAGCCTTGGAACCATAATGCACGATACTTGCTTGTTCTGAATTTTCTACAAAAAGCACGTGAAGAGAGATTTCCTTATCATCTTGGTGTTACACTTGGGCGACTAATTAAGGTGGCTCTTTCTTGTCGACTGTGTTCCACGAAAAACATGTCTTATCAATATCAGAAGTTCCAATTACTACTTTGTGCTTCAGAGCTCAGTTTGCAGGGTGGTAATCAAAGCGACTGTATTGAGCATGCCAAAAATGCATCAGTGACTTTGCTTCCTGACAATTATCTTTTTTTTGTACACTTGATGTTATGTCGAGCCTATGCTGCAGAAAATGATGTTACCAACCTTCAAATGGAGTATATAAGATGTTTGGAGCTGAAGACAGATTATCAATTTGGTTGGATATGTCTTAAATTCATGGAATCTCAATATAACCTGCAAGAAAATTTGAAGAGAATAGATTTGATCTATGAAGAATGCTCAAAAGGGGGGAAGGATCTATGGAATATTTCAATGCCTCTGTTTTATCTGCTGAAGGGTTTGATTTCTATAAGGGATCAAGATCTTGTCTCTGCTGAAGAATGTCTCTCACAGGCATGTTCTTTCGCTTATGATGAGAGCTGCCTCTTCCTTTGTCATGGTGCTACCTGCATTGAACTTTCCAGGAAGCTTTGCAGTTCGCACTACTTGCTACTTGCTGTAAAGAGTCTCACCAGAGCTCAAGAAACGTGTGTAATCTCAGTACCAATTGTCTCAATATTACTGGCTCAAGCGAAGGGAAGCCTTGGTTCTAAGGAAAGCTGGGAGAAGAATCTTCGCTTGGAATGGTATTCTTGGCCACCGGAAATGAGGCCGGCTGAGCTCTTCTTTCAAATGCATGTCCTTGGAAGGCAGGCCATGGGCAAGGAGTATGGCCCAACCTCCTCGAATGTGGAGTTGTGTCAGAGCCCTAAGCGATGGGTCCTCCGGGCAATACATACCAACCCTTCTTGCATGAGATTTTGGGAGGTTTTGCAGAAGGTTGCGGAATGA 3657 43.81 MELDVAASRGQKCDVAAAVSGFSDASQAVHGSEEYELKEGTNTVLINELHEAVNAHPEDPSLHFDLGLFLWEKGPNSKENKERAANHFLTSAKLNPQNGAAFRYLGHYYASLSLDMQRALKCYQRAVTLNPDDSLSGEALCDLLDQGGKEIMQVSVCREASGKSPRAFWAFRRLGYLQVHQKKWSAAVQSLQHAIRGYPNCCDLWEALGLAYQRLGRFTAAIKSYGRAIELEDTSIFASIESGNIFLMLGSFRKGVEKFQHALEISPQNIAAQFGVSFGLLCLAKECIQLGAFIWASSLLEEASQVAEASTRLAGNLSCLWKLHGDIQLLYAKCFPWMDKSGGLERDVVAFNASILSWKKTCTLAAISASCSYQRALRLAPWQANIYTDIAIASDLTSHLNSGLGPDADIWKLPEKLALGSLLLEGDNYDFWVALGYLSHNNALKQHALIRGLQLDVALAFAWAHLGKLYRNMDEKQLARQAFDCARSIDPSLAIPWAGMSADFDVMESTSDEAFQSCLYAVQISPIAEFQIGLAKLALHSGQLSSSQLFRAICQAVQLAPHYPESHNLNGLVCEARLDYQSAATSYKRARCAVNISSDKVPKDLTRDISINLARSLSKVGNSGEALMECEILKKEGMLDIEGLQLYAFSLWQVGKNEEALSVARNLAGSISSIGGTSVAASVSFICRLLYSISGLDSAIISIQRMPKKMFQSSKISLVVSAIHAFDQSNRLESIVSSSRSFLNSHEEITRMHFLIALSKLVKNGSECSLGFQSGVAHLRKALHMYPNSNLIRNLLGYLLLFTEDSNHCHMATRCCKMYASNYQNQEGVKCATEILGAGAVACYSVGNSNPKFSFPTCKHQCLNDHGAVRELQRYLHQEPWNHNARYLLVLNFLQKAREERFPYHLGVTLGRLIKVALSCRLCSTKNMSYQYQKFQLLLCASELSLQGGNQSDCIEHAKNASVTLLPDNYLFFVHLMLCRAYAAENDVTNLQMEYIRCLELKTDYQFGWICLKFMESQYNLQENLKRIDLIYEECSKGGKDLWNISMPLFYLLKGLISIRDQDLVSAEECLSQACSFAYDESCLFLCHGATCIELSRKLCSSHYLLLAVKSLTRAQETCVISVPIVSILLAQAKGSLGSKESWEKNLRLEWYSWPPEMRPAELFFQMHVLGRQAMGKEYGPTSSNVELCQSPKRWVLRAIHTNPSCMRFWEVLQKVAE 1218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 19765 35872 - Conep20aG0000300.1 Cone20ag0003 459907

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0003 1218 Pfam Tetratricopeptide repeat 203 233 IPR013105 -
Cone20ag0003 1218 PANTHER SUPERKILLER 3 PROTEIN-RELATED 33 1139 IPR039226 GO:0006401(InterPro)|GO:0034427(PANTHER)|GO:0055087(InterPro)|GO:0055087(PANTHER)
Cone20ag0003 1218 SUPERFAMILY TPR-like 555 805 IPR011990 GO:0005515(InterPro)
Cone20ag0003 1218 Gene3D Tetratricopeptide repeat domain 46 155 IPR011990 GO:0005515(InterPro)
Cone20ag0003 1218 Gene3D Tetratricopeptide repeat domain 409 669 IPR011990 GO:0005515(InterPro)
Cone20ag0003 1218 Gene3D Tetratricopeptide repeat domain 156 404 IPR011990 GO:0005515(InterPro)
Cone20ag0003 1218 ProSiteProfiles TPR repeat profile. 236 269 IPR019734 GO:0005515(InterPro)
Cone20ag0003 1218 SUPERFAMILY TPR-like 48 141 IPR011990 GO:0005515(InterPro)
Cone20ag0003 1218 ProSiteProfiles TPR repeat profile. 460 493 IPR019734 GO:0005515(InterPro)
Cone20ag0003 1218 ProSiteProfiles TPR repeat profile. 202 235 IPR019734 GO:0005515(InterPro)
Cone20ag0003 1218 SMART tpr_5 99 133 IPR019734 GO:0005515(InterPro)
Cone20ag0003 1218 SMART tpr_5 460 493 IPR019734 GO:0005515(InterPro)
Cone20ag0003 1218 SMART tpr_5 202 235 IPR019734 GO:0005515(InterPro)
Cone20ag0003 1218 SMART tpr_5 236 269 IPR019734 GO:0005515(InterPro)
Cone20ag0003 1218 SMART tpr_5 1048 1081 IPR019734 GO:0005515(InterPro)
Cone20ag0003 1218 SMART tpr_5 168 201 IPR019734 GO:0005515(InterPro)
Cone20ag0003 1218 SMART tpr_5 60 98 IPR019734 GO:0005515(InterPro)
Cone20ag0003 1218 SUPERFAMILY TPR-like 165 590 IPR011990 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0003 K12600 - - vvi:100259801 1565.05
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g17 . Blo12g00835 . Bda03g00340 . Bpe04g00300 Bma04g00309 . . . . Cma09g00007 . . . . . . . . . . . . . . . . . . . . . . Cone20ag0003 . Csa04g02754 . . . . . . . . . . . . Cmo09g00008 . . . Car09g00007 . . . . . . . . . . . . . . . . . . . Cme07g00008
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007064 1 4 1 1 1 0 1 0 0 1 1 1 1 1 1 1 0 1 0 0 1 1 1 1 2 1 1 0 1 1 27