Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0004 ATGGATTCCGATTACGGCATTCCCAGAGAACTTTCTGATCTTCAGAAACTTCGATCTTTGTACGAACCGCAGCTTCCTCCTTGTCTTCAGGGAACAACTGTCAGGGTTGAATTTGGTGATGCAACCACAGCTTCAGACCCCACTGATTCCCACACCATAAGCCGCTTCTTTCCACAAACGTATGGTCAGCCATTGGCTCACTTTCTCAGGGCAACTGCTAAAGTCCCCGATGCTCAGATCATCTCTGACCATCCAGTCATTAGGGTGGGTGTAGTCTTTTGTGGGAGACAATCCCCTGGAGGACATAATGTCATATGGGGCCTGCACGATGCTATCAAAATACACAACCCAAACAGTACTTTATTTGGATTTCTGGGTGGCTCGGAAGGTTTGTTTGCGCAAAAGACACTTGAGATAACCGATGAAATTCTTTCAACCTACAAAAACCAAGGTGGTTATGATTTACTGGGACGCACAAAAGATCAAATTCGAACTACTGAACAAGTTAATGCTGCTCTAACTGCATGCAATGAGTTGAAATTGGATGGTCTTGTCATTGTTGGAGGTGTGACATCAAACACCGATGCTGCACAGCTTGCAGAAACATTTGCTGAAGCCAAGTGCAAGACAAAGGTTGTTGGGGTTCCAGTCACTTTAAATGGAGATCTTAAGAACCAGTTTGTGGAAACAAATGTTGGTTTTGATACTATCTGTAAGGTCAATTCCCAGCTCATCAGCAATGTCTGTACAGATGCTCTATCAGCAGAGAAGTATTATTATTTCATCAGACTCATGGGCCGAAAAGCATCCCATGTTGCTTTGGAGTGTACCCTTCAGTCACATCCAAATATGGTAATTCTTGGGGAGGAAGTGGCTGCTTCAAAACTTACTCTATTTGACCTGTCAAAACAGGTCTGTGATGCTGTTCAGGCGAGGGCTGAACAAGATAAGTACCATGGTGTTATCCTACTGCCAGAAGGACTGATTGAAAGCATTCCTGAAGTGTATGCTCTATTAAAGGAAATTCATAGCTTGCTCAGACAAGGTGTTCCTCTTGATAATATTTCTTCTCAACTTTCACCTTGGGCATCTGCTTTGTTCGAGTTTCTGCCACCTTTTATTAAGAAACAGTTGCTCCTTCACCCAGAATCAGATGACTCTGCACAGTTATCCCAGATTGAGACAGAGAAGCTTCTGGCACATCTTGTAGAGGCAGAGATGAACACGCGTCTGAAAGAAGGGACATACAAGGGGAAGAAATTTAATGCCATCTGCCACTTCTTTGGTTACCAAGCTCGGGGTTCCTTGCCGTCAAAGTTTGATTGTGATTATGCCTATGTTCTTGGGCACATTTGCTACCATATTTTGGCAGCCGGTTTGAATGGTTATATGGCTACTGTAACTAACTTAAAAAATCCGGTTAACAAGTGGCGCTGTGGTGCTGCTCCAATTACAGCGATGATGTCAGTAAAGCGGTGGTCCCAAAATCCTGGTGCCACATCTATTGGGATACCTGCTATTCATCCAGCTACTGTAGATTTGAGAGGCAAAGCTTATGACCTGTTGAGACAAAATGCAACAAACTTTCTCATGGATGATCTTTACAGAAATCCAGGACCCCAGCAGTTTGATGGTCCTGGTTCTGATGCTAAGCCTGTGACCTTGTGTGTTGAAGATCAAGATTATATGGGCAGAATCAAGAAACTGCAGGAATATCTTGATAAGGTTCGAACCATTGTGAAGCCCGGGTGTTCTCAGGAGGTCCTGAAGGCAGCTTTGAGTGTCATGGCTTCAGTAACTGACATTCTCTCAGCAATGTCTTCATCCTCATACAGTGGTCAGACATCACTTTGA 1854 43.96 MDSDYGIPRELSDLQKLRSLYEPQLPPCLQGTTVRVEFGDATTASDPTDSHTISRFFPQTYGQPLAHFLRATAKVPDAQIISDHPVIRVGVVFCGRQSPGGHNVIWGLHDAIKIHNPNSTLFGFLGGSEGLFAQKTLEITDEILSTYKNQGGYDLLGRTKDQIRTTEQVNAALTACNELKLDGLVIVGGVTSNTDAAQLAETFAEAKCKTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRKASHVALECTLQSHPNMVILGEEVAASKLTLFDLSKQVCDAVQARAEQDKYHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPLDNISSQLSPWASALFEFLPPFIKKQLLLHPESDDSAQLSQIETEKLLAHLVEAEMNTRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPVNKWRCGAAPITAMMSVKRWSQNPGATSIGIPAIHPATVDLRGKAYDLLRQNATNFLMDDLYRNPGPQQFDGPGSDAKPVTLCVEDQDYMGRIKKLQEYLDKVRTIVKPGCSQEVLKAALSVMASVTDILSAMSSSSYSGQTSL 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 44293 50454 + Conep20aG0000400.1 Cone20ag0004 459908

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0004 617 PANTHER PYROPHOSPHATE--FRUCTOSE 6-PHOSPHATE 1-PHOSPHOTRANSFERASE 11 610 - GO:0005829(PANTHER)|GO:0008443(PANTHER)|GO:0009749(PANTHER)|GO:0015979(PANTHER)|GO:0047334(PANTHER)
Cone20ag0004 617 Hamap Pyrophosphate--fructose 6-phosphate 1-phosphotransferase [pfp]. 10 561 IPR011183 GO:0005524(InterPro)|GO:0006096(InterPro)|GO:0047334(InterPro)
Cone20ag0004 617 PRINTS ATP-dependent phosphofructokinase family signature 118 131 IPR022953 GO:0003872(InterPro)|GO:0006002(InterPro)|GO:0006096(InterPro)
Cone20ag0004 617 PRINTS ATP-dependent phosphofructokinase family signature 316 328 IPR022953 GO:0003872(InterPro)|GO:0006002(InterPro)|GO:0006096(InterPro)
Cone20ag0004 617 PRINTS ATP-dependent phosphofructokinase family signature 217 234 IPR022953 GO:0003872(InterPro)|GO:0006002(InterPro)|GO:0006096(InterPro)
Cone20ag0004 617 PRINTS ATP-dependent phosphofructokinase family signature 180 196 IPR022953 GO:0003872(InterPro)|GO:0006002(InterPro)|GO:0006096(InterPro)
Cone20ag0004 617 PRINTS ATP-dependent phosphofructokinase family signature 254 270 IPR022953 GO:0003872(InterPro)|GO:0006002(InterPro)|GO:0006096(InterPro)
Cone20ag0004 617 FunFam Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha 332 396 - -
Cone20ag0004 617 PIRSF PPi_PFK_PfpB 4 570 IPR011183 GO:0005524(InterPro)|GO:0006096(InterPro)|GO:0047334(InterPro)
Cone20ag0004 617 SUPERFAMILY Phosphofructokinase 12 559 IPR035966 GO:0003872(InterPro)|GO:0006096(InterPro)
Cone20ag0004 617 Pfam Phosphofructokinase 88 451 IPR000023 GO:0003872(InterPro)|GO:0006096(InterPro)
Cone20ag0004 617 Gene3D Phosphofructokinase domain 234 548 IPR035966 GO:0003872(InterPro)|GO:0006096(InterPro)
Cone20ag0004 617 Gene3D - 18 512 - -
Cone20ag0004 617 Gene3D Phosphofructokinase; domain 3 332 396 - -
Cone20ag0004 617 NCBIfam diphosphate--fructose-6-phosphate 1-phosphotransferase 14 558 IPR011183 GO:0005524(InterPro)|GO:0006096(InterPro)|GO:0047334(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0004 K00895 - - csv:101208728 1129.39
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0026 Cone-Chr1:180763 Cone20ag0004 Cone-Chr20:44293 6.32E-124 dispersed
Cone20ag0004 Cone-Chr20:44293 Cone5ag1842 Cone-Chr5:12936787 4.54E-128 dispersed
Cone17ag1482 Cone-Chr17:9987181 Cone20ag0004 Cone-Chr20:44293 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g33 . Blo12g00840 . Bda03g00336 Bpe02g00290 Bpe04g00295 Bma04g00304 Bma01g02424 . . Cma01g02045 Cma09g00016 Car01g01611 . . . . . . . . . . . . . . . . . . . . Cone17ag1482 Cone20ag0004 Lsi04g02427 Csa04g02743 . . . . . . . . . . . Cmo01g02102 Cmo09g00015 . . . Car09g00015 . Cpe02g00011 . . . . . . . Cla11g01857 . Cec11g1951 . . Cmu11g1892 . . . Chy07g00431 Cme07g00019
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003456 2 1 2 2 2 0 2 0 0 1 1 1 2 1 1 2 0 2 1 1 1 1 1 1 1 1 1 7 4 1 43