Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0007 ATGACTCGTCCTTTTAGGTTCCTCGGCGAGGCGAACTCCTCCGCCCCCACCCCCCCTCCGCCGCCACCGGTTTCCTACGACTCAGACTTTGTCATAATTCTCGCAGCTCTTCTTTGCGCCCTAATCTGTGTTCTCGGCCTCATAGCCGTCGCTCGCTGCGCCTGGATGCGCCTCCTCTCCGGGTTGGGTCGAGGAGCTCCCAATATCTCCGGATTAGGTCGAAGAGCTTCCAACGCCACTATTCGTATACCAGCTCCTCCCCTTCCACCAAACAAGGGCCTCAAGAAGAAGATCCTTAGATCTCTCCCTAAACTCACCTTCTCATACGAATCCTCAGCAGAGTTCTCAGACTGTGCCATCTGCCTCACAGAGTTCTCCTCCGGCGAAGAATTCCGAGTGTTGCCGCAGTGCGGCCATGGTTTCCACGTGGCCTGCATCGACACGTGGCTGAGATCGCACTCCTCGTGCCCTTCGTGCCGTCAGATTCTGCCTTCCAGCTCCGGTGGCGGTGGCGACATGGAAGCCAGGCGAAAAGGAAGAGACGATGATGTGAATGGATTCCTGCCTTAG 570 57.19 MTRPFRFLGEANSSAPTPPPPPPVSYDSDFVIILAALLCALICVLGLIAVARCAWMRLLSGLGRGAPNISGLGRRASNATIRIPAPPLPPNKGLKKKILRSLPKLTFSYESSAEFSDCAICLTEFSSGEEFRVLPQCGHGFHVACIDTWLRSHSSCPSCRQILPSSSGGGGDMEARRKGRDDDVNGFLP 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 67139 67968 - Conep20aG0000700.1 Cone20ag0007 459911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0007 189 CDD RING-H2_EL5-like 117 160 - -
Cone20ag0007 189 MobiDBLite consensus disorder prediction 1 21 - -
Cone20ag0007 189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 166 IPR013083 -
Cone20ag0007 189 ProSiteProfiles Zinc finger RING-type profile. 118 160 IPR001841 -
Cone20ag0007 189 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 18 166 IPR052788 -
Cone20ag0007 189 MobiDBLite consensus disorder prediction 165 189 - -
Cone20ag0007 189 SUPERFAMILY RING/U-box 100 166 - -
Cone20ag0007 189 Pfam Ring finger domain 117 160 IPR001841 -
Cone20ag0007 189 MobiDBLite consensus disorder prediction 173 189 - -
Cone20ag0007 189 SMART ring_2 118 159 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0007 Cone-Chr20:67139 Cone3ag0475 Cone-Chr3:2311106 2.95E-26 dispersed
Cone12ag0881 Cone-Chr12:7847918 Cone20ag0007 Cone-Chr20:67139 1.71E-46 wgd
Cone17ag1471 Cone-Chr17:9949472 Cone20ag0007 Cone-Chr20:67139 1.97E-107 wgd
Cone20ag0007 Cone-Chr20:67139 Cone4ag2034 Cone-Chr4:14120697 2.34E-23 wgd
Cone20ag0007 Cone-Chr20:67139 Cone7ag1948 Cone-Chr7:12422298 2.06E-57 wgd
Cone20ag0007 Cone-Chr20:67139 Cone8ag0912 Cone-Chr8:8839713 6.60E-51 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0007 - - - 0.0