Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone20ag0007 | ATGACTCGTCCTTTTAGGTTCCTCGGCGAGGCGAACTCCTCCGCCCCCACCCCCCCTCCGCCGCCACCGGTTTCCTACGACTCAGACTTTGTCATAATTCTCGCAGCTCTTCTTTGCGCCCTAATCTGTGTTCTCGGCCTCATAGCCGTCGCTCGCTGCGCCTGGATGCGCCTCCTCTCCGGGTTGGGTCGAGGAGCTCCCAATATCTCCGGATTAGGTCGAAGAGCTTCCAACGCCACTATTCGTATACCAGCTCCTCCCCTTCCACCAAACAAGGGCCTCAAGAAGAAGATCCTTAGATCTCTCCCTAAACTCACCTTCTCATACGAATCCTCAGCAGAGTTCTCAGACTGTGCCATCTGCCTCACAGAGTTCTCCTCCGGCGAAGAATTCCGAGTGTTGCCGCAGTGCGGCCATGGTTTCCACGTGGCCTGCATCGACACGTGGCTGAGATCGCACTCCTCGTGCCCTTCGTGCCGTCAGATTCTGCCTTCCAGCTCCGGTGGCGGTGGCGACATGGAAGCCAGGCGAAAAGGAAGAGACGATGATGTGAATGGATTCCTGCCTTAG | 570 | 57.19 | MTRPFRFLGEANSSAPTPPPPPPVSYDSDFVIILAALLCALICVLGLIAVARCAWMRLLSGLGRGAPNISGLGRRASNATIRIPAPPLPPNKGLKKKILRSLPKLTFSYESSAEFSDCAICLTEFSSGEEFRVLPQCGHGFHVACIDTWLRSHSSCPSCRQILPSSSGGGGDMEARRKGRDDDVNGFLP | 189 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 67139 | 67968 | - | Conep20aG0000700.1 | Cone20ag0007 | 459911 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone20ag0007 | 189 | CDD | RING-H2_EL5-like | 117 | 160 | - | - | |
Cone20ag0007 | 189 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Cone20ag0007 | 189 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 89 | 166 | IPR013083 | - | |
Cone20ag0007 | 189 | ProSiteProfiles | Zinc finger RING-type profile. | 118 | 160 | IPR001841 | - | |
Cone20ag0007 | 189 | PANTHER | RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED | 18 | 166 | IPR052788 | - | |
Cone20ag0007 | 189 | MobiDBLite | consensus disorder prediction | 165 | 189 | - | - | |
Cone20ag0007 | 189 | SUPERFAMILY | RING/U-box | 100 | 166 | - | - | |
Cone20ag0007 | 189 | Pfam | Ring finger domain | 117 | 160 | IPR001841 | - | |
Cone20ag0007 | 189 | MobiDBLite | consensus disorder prediction | 173 | 189 | - | - | |
Cone20ag0007 | 189 | SMART | ring_2 | 118 | 159 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone20ag0007 | Cone-Chr20:67139 | Cone3ag0475 | Cone-Chr3:2311106 | 2.95E-26 | dispersed | |
Cone12ag0881 | Cone-Chr12:7847918 | Cone20ag0007 | Cone-Chr20:67139 | 1.71E-46 | wgd | |
Cone17ag1471 | Cone-Chr17:9949472 | Cone20ag0007 | Cone-Chr20:67139 | 1.97E-107 | wgd | |
Cone20ag0007 | Cone-Chr20:67139 | Cone4ag2034 | Cone-Chr4:14120697 | 2.34E-23 | wgd | |
Cone20ag0007 | Cone-Chr20:67139 | Cone7ag1948 | Cone-Chr7:12422298 | 2.06E-57 | wgd | |
Cone20ag0007 | Cone-Chr20:67139 | Cone8ag0912 | Cone-Chr8:8839713 | 6.60E-51 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone20ag0007 | - | - | - | 0.0 |