Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0013 ATGTCATCTGAAAGACAAACTGGAGAGGAATCTATTTATCAAGATTTTGAGGCTTTGACTGTGTCAAAACGTCTTGTGAGAAGTGTTAGCCAGAAATTGAAAAAGAAAGATCACAAGGCTCTGCAAGAGGAGGATTGTTCTCGTGGTATATCTCTGAAATGTCTTACTCTGTACGCTAGAGGTGGGGGTTGCAAAGTAGGCGATGACACTGGCGAGGAAATTGGGGACCCAAGTAGTAGAAGGAGATCAAGTGCCAGTGAAGAAGGCAAAGGGTACGAATCCATCCATGATACTGGCATGGATTGTTTCTCATATGGAATGAAGGAGAGATTTTGGAAGAAACACGGCCGAAAGGGATCTGAACCTGAGGAATCTATTGGGAACAGTGGGATGCGCATTTTTCTTCCCGATGACATCTTGGAAATGTGCTTGGTGAGGCTCCCACTTACTAGTCTTATGAATGCCCGACTTGTCTGCAAGAAATGGAGATCCCTCACTACCACTCCTCGGTTTATGCAAATGAGAAGAGAAGGTTTGCATCAGAATCCATGGCTATTTCTCTTTGGTGCTGTTAAAGATGGCTATTGCTCCGGAGAGATACACGCACTGGATGTAAACTTAAAGCAATGGCATAGGATAAATGCTGATGTTCTCAAGGGAAGGTTCATGTTCTCCATTGCCACTTTCCAGGATGATGTCTATGTGGTTGGAGGTTGCTCTAGCCTGACCAACTTTGGAAGGGTGGATAGGAGCTCATTCAAGACACATAAAGGGGTCTTGGTTTTTAGTCCTTTGACTAAATCTTGGCATAAAGTTGCATCTATGAAGTATGCAAGGTCAATGCCTGTTTTAGGAACTTCTCTGGTTAAATCAGATTTTTCAGTCAATCAAAGTCATCAAAATCGTCAAGACAGACGTTTTCCAAGATCGCGTCCTGGTGGACCATTAGATGTTTATGAGGATCCTCACAGGCTTTCACTTAGATGTCAACATAGAAATGCTTTTGACCGAAATGAGGTCTCACTATTGCCAAATAGAAAGCCAAATAAGTTCACCAGGCAAATTAATGATCAATCGAGGGCAAAAGTTTGTAGGAGGTTTGTGCTCATCGCCATTGGTGGTCTTGGCTCTTGGGAGGAGCCATTGGATTCGGGTGAGATCTATGATTCCCTATCAAATAAATGGACAGAAATCCCAAGGCTGCCTGCAGATTTTGGAATTGTTTGCTCTGGGATTGTTTGCAATGGAATGTTCTATGTTTATTCCGAGACAGACAAACTCGCAGGATATAACATAGAAAGGGGCTTCTGGATTGGAATCCAGACCACTCCATTCCCACCCCGTGTTCATGAGTACTACCCTAAGCTTGTATCATGCAATGGGCGCTTATTCATGCTCTCAGTCTCCTGGTGTGAAGGAGATGGTCAAATAGGGCAGAGGAACAAGGCTGTTCGGAAACTGTGGGAGCTTGATCTCATGTACCTTTCCTGGGGTGAAGTCTCGGTTCATCCGGATGCTCCAATGGACTGGAATGCTGCATTTGTTGCAGATAGGAACCTGATATTTGGGGTTGAAATGTTCAAAATATTTGGTCAGGTGTTGGATTTCTTAACGGTTTGCCATGTCTCTGATTTGGGAACTAAATGGAGTCATATTTCAAGGACTAGAATCACCCATGAATTGGATGCTTCTTTCTGCATGACCAAATCAATGGCAGTACTACATCTTTAA 1731 43.5 MSSERQTGEESIYQDFEALTVSKRLVRSVSQKLKKKDHKALQEEDCSRGISLKCLTLYARGGGCKVGDDTGEEIGDPSSRRRSSASEEGKGYESIHDTGMDCFSYGMKERFWKKHGRKGSEPEESIGNSGMRIFLPDDILEMCLVRLPLTSLMNARLVCKKWRSLTTTPRFMQMRREGLHQNPWLFLFGAVKDGYCSGEIHALDVNLKQWHRINADVLKGRFMFSIATFQDDVYVVGGCSSLTNFGRVDRSSFKTHKGVLVFSPLTKSWHKVASMKYARSMPVLGTSLVKSDFSVNQSHQNRQDRRFPRSRPGGPLDVYEDPHRLSLRCQHRNAFDRNEVSLLPNRKPNKFTRQINDQSRAKVCRRFVLIAIGGLGSWEEPLDSGEIYDSLSNKWTEIPRLPADFGIVCSGIVCNGMFYVYSETDKLAGYNIERGFWIGIQTTPFPPRVHEYYPKLVSCNGRLFMLSVSWCEGDGQIGQRNKAVRKLWELDLMYLSWGEVSVHPDAPMDWNAAFVADRNLIFGVEMFKIFGQVLDFLTVCHVSDLGTKWSHISRTRITHELDASFCMTKSMAVLHL 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 100589 103606 + Conep20aG0001300.1 Cone20ag0013 459917

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0013 576 Pfam F-box domain 135 171 IPR001810 GO:0005515(InterPro)
Cone20ag0013 576 Pfam Kelch motif 221 276 IPR006652 GO:0005515(InterPro)
Cone20ag0013 576 Pfam Kelch motif 369 402 IPR006652 GO:0005515(InterPro)
Cone20ag0013 576 SMART kelc_smart 368 415 IPR006652 GO:0005515(InterPro)
Cone20ag0013 576 SMART kelc_smart 232 289 IPR006652 GO:0005515(InterPro)
Cone20ag0013 576 MobiDBLite consensus disorder prediction 295 315 - -
Cone20ag0013 576 MobiDBLite consensus disorder prediction 68 95 - -
Cone20ag0013 576 SMART fbox_2 135 175 IPR001810 GO:0005515(InterPro)
Cone20ag0013 576 SUPERFAMILY Kelch motif 182 523 IPR015915 GO:0005515(InterPro)
Cone20ag0013 576 CDD F-box_AtFBW1-like 134 171 - -
Cone20ag0013 576 PANTHER OS09G0555300 PROTEIN 1 576 - GO:0019005(PANTHER)
Cone20ag0013 576 SUPERFAMILY F-box domain 131 197 IPR036047 GO:0005515(InterPro)
Cone20ag0013 576 FunFam F-box/kelch-repeat protein At5g42360 360 564 - -
Cone20ag0013 576 FunFam F-box/kelch-repeat protein isoform A 148 296 - -
Cone20ag0013 576 ProSiteProfiles F-box domain profile. 129 174 IPR001810 GO:0005515(InterPro)
Cone20ag0013 576 Gene3D - 148 298 IPR015915 GO:0005515(InterPro)
Cone20ag0013 576 Gene3D - 360 562 IPR015915 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0013 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1463 Cone-Chr17:9914662 Cone20ag0013 Cone-Chr20:100589 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g74 . . . . . . . . Cmo05g00989 Cmo12g00622 . . . Car12g00663 . . Cpe07g00596 Bhi04g01221 . . . . . . Cla08g00935 Cam08g1382 Cec08g0963 Cco08g1082 Clacu08g1089 . Cre08g0872 . . Cone17ag1463 Cone20ag0013 . . . Cme03g01334 . Blo18g00741 . Bda01g01565 Bpe02g01759 . Bma01g00698 . . . . Cma12g00686 Cma05g00969 Car05g00853 . Cpe11g00781 . . . . . . . . . . . . . . . Lsi08g00777 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007825 1 2 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 2 1 1 35