Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0014 ATGGAGACTGTGGTGAGGAAATATCAGCAAAGATTCAGGAAAGTTAGAGACGAGATGAACCGTTGGGATGAGCTTCAGGCTCGCTTAATTTCACAATTCAAGAACGCTTCCTCCATCATTGAGAGGTTGCAGGCGCTTCAAGATCGTTCGAATTATGGCAGTCTGAGTTGTGTCCGTGGCATTAGAGATGCTCTGATGACGAAGCAGATGGAATCGATGGAGCTTATCTTGTTCTCTATGAAGAAGACTATGGAAGAATTTAGTGGCATAGTTATTTCTCTTGAGAAGATTCATCGTGATAGTAAGCAAATTGTGAAAGGTGGTGGTTCCAGTCATCCTTCTATGAAACAACTACAGTTAAGAGTTGGCATAAAGCCCAGTCTTGAAGACTGCTTGGATGGCCTTTTGCTTCTTCACAACATGCACCACTCTGAGTACCTTCTTAAATCATCTGTGGTCTCAGCACTTCCAGCACTTATCTTGAAACCCAATGTGCAAGATCTCAGTTCTCTGCAGCAGCTCTTGGTTGACCAGCCGAACATTCCCAAAGAGGAAGGGCTTACTTTAGCTTATATGGCTGGGAGCTGGGATGGGAGTTATGATCCAGGTAGCCAGTCAGAAGAGAGCAATTATTTTGAGAGACTGCGCGTTGAGCCTATTTATGATGCATTTGTCTGCCCTCTAACAAAGCAAGTCATGCATGATCCTGTTACCATAGAAACTGGGCAAACCTTTGAAAGAGAAGCGATCGAAAAGTGGTTTAAGGAATCGGAGGAGAGTGGAAGGAAGCTAGTGTGTCCATTGACACAGAGAGAGTTAAAAAGCACGGATCTTAACCCTAGTATTGCATTGAGGAACACCATCGAAGAATGGACTGCCAGGAATGAAGCTGCTCAGCTCGATATGACTCGTAGGACATTAAATCTAGACAGCACAGAAAGCGACATTATGGTCTCTTTGAAGTATGTTCAGTTTGTCAGCCAAAACAGCCGATCAAATAAGCATATTGTACGTAATGCTGGGGTGGTACCTATGATTATTGGTCTGTTGAAGAGCACTAGTCGCAAAGTTCGGTGCAGAGCTTTGGAAACACTTTGCATTGTGGTGCAGGAAGATGATGATAATAAGGAAATATTAGCTGAGGGTGACACTGTACGCACAATAGTAAAGTTCTTGTCGCATGAGCTTTCTAAAGAGCGGGAGGAAGCTGTGTCCTTATTGTATGAGCTCTCCAAATCTGAGGCCTTGTGCAAGAAGATTGGTTCAGTCAATGGAGGGATTCTCATACTGGTTGGAATGACTAGTAGTAATTCAGAGAATGTATTGACAGTGGAAAAGGCTGATAAAATATTGGAGAACCTTGAAAAGTGTGAGAATAATGTGCGACAGATGGCTGAATGTGGTAGGCTGAAGCCTCTTCTATCACTGATCCTCAAAGGTCGACCAGAAACCAAACTGGCCATGGCTGCTTTTCTGGGTGAGTTAGTTTTGAATAACGATGTCAAGGTCCTTGTGGCTAAAACGGTGGGGTCGTCTCTGATCAACATCATGAGGAGCGGTAATATGCAGTCAAGAGAAGTTGCTTTGAAAGCCTTAAACCAGATCTCTTCGTTTGAGGCAAGTGCAGAAGTATTGATAGAAGAAGGAATACTCCCCCCACTTGTAAAAGACCTTTTCACCGTGGGTTCCAACCAACTTCCCATGCGACTAAAAGAGGTATCCGCAACAATTCTTGCCAATGTTGTCAACTCGGGCCATGACTTTGATTCCATCCCAGTGGGACCGGACAATCAAACCACTCTGATTTCGGAGGATATAGTCCATAATCTGCTACATCTCATTAGCAACACTGGCCCAGCAATTGAATGTAAGCTTCTCCAGGTTCTTGTTGGGCTCACCAATTCTCCTTCTAGCGTTGTAAATGTTGTTGCTGCCATTAAAAGTTCTGGTGCAACTATCAGTTTGGTTCAGTTTATTGAGGCTCCACAGCAGGATCTGCGTGTAGCTTCCATAAGACTCCTCCAGAATCTCTCGCCACACATGGGTCAGGAACTAGCTGACGCTCTACGTGGCACTGTAGGTCAGCTAGGAAGTCTATTTAAGGTCATATCAGAAAATACTGGAATCTCAGAAGAGCAGGCTGCTGCTGTTGGTCTCCTAGCCGACCTTCCTGAAAGGGATTTGGGCCTCACTAGGCAAATGCTTGATGATGATTACTTCAGGCTGGTTTACTCTAGAATAGTTAGAATACGGCAAGGAGAGACTAGGGGCAGCCGCTTTGTGACTCCATTTCTTGAAGGGCTTGTGCGTATTCTTGCAAGGGTTACATTTTCCTTGCACGACGAGCCCAATGCTATTGCATTTTGTCGTGATTACAGTCTTGCTGCTTTGTTCATTGAACTGCTTCAGTCTAATGGCCTTCACAATGTACAGATGGCTTCTGCTACTGCATTGGAAAATCTGTCCCTAGAAACCATACACTTGACCAAACTGCCCGAGTTCCCACCCCCTCCTTTTTGTGCTTCAATCTTTCCATGCTTTAGCAAACCGCCTACAATAACCGGATTGTGTAGGCTCCACAGAGGAACATGTTCTTTGAGAGAAAGTTTTTGTCTTCTGGAAGGGCAGGCAGTGGACAAGTTGGTAGCTCTATTGGACCATACAAATGAGAGGGTTGCAGAGGCTGCTCTTTCTGCACTGTCTACTTTGTTGGATGATGCAGTTGATATTGAACAGGGTATACTAGTGTTGTGTGATGCTGAAGGAGTTAAGCCTGTACTTGATATTTTAGTTGAAAAACGTACAGAGAATATGTGGAGGAGGGCTGTGTGGACGGTGGAGAGACTTTTGCGGACAGATGATATTGCATATGATGTCTCTGGAAACCAAAATGTGAGTACGGCCCTTGTTGATGCATTTCAGCATGGTGATTACCGAACCCGACAAATTGCTGAACTTGCTCTGAAACATGTCGATAAGTTACCCAATTTTTCTGGGATCTTTCCAAATATGGGGTAG 3018 44.47 METVVRKYQQRFRKVRDEMNRWDELQARLISQFKNASSIIERLQALQDRSNYGSLSCVRGIRDALMTKQMESMELILFSMKKTMEEFSGIVISLEKIHRDSKQIVKGGGSSHPSMKQLQLRVGIKPSLEDCLDGLLLLHNMHHSEYLLKSSVVSALPALILKPNVQDLSSLQQLLVDQPNIPKEEGLTLAYMAGSWDGSYDPGSQSEESNYFERLRVEPIYDAFVCPLTKQVMHDPVTIETGQTFEREAIEKWFKESEESGRKLVCPLTQRELKSTDLNPSIALRNTIEEWTARNEAAQLDMTRRTLNLDSTESDIMVSLKYVQFVSQNSRSNKHIVRNAGVVPMIIGLLKSTSRKVRCRALETLCIVVQEDDDNKEILAEGDTVRTIVKFLSHELSKEREEAVSLLYELSKSEALCKKIGSVNGGILILVGMTSSNSENVLTVEKADKILENLEKCENNVRQMAECGRLKPLLSLILKGRPETKLAMAAFLGELVLNNDVKVLVAKTVGSSLINIMRSGNMQSREVALKALNQISSFEASAEVLIEEGILPPLVKDLFTVGSNQLPMRLKEVSATILANVVNSGHDFDSIPVGPDNQTTLISEDIVHNLLHLISNTGPAIECKLLQVLVGLTNSPSSVVNVVAAIKSSGATISLVQFIEAPQQDLRVASIRLLQNLSPHMGQELADALRGTVGQLGSLFKVISENTGISEEQAAAVGLLADLPERDLGLTRQMLDDDYFRLVYSRIVRIRQGETRGSRFVTPFLEGLVRILARVTFSLHDEPNAIAFCRDYSLAALFIELLQSNGLHNVQMASATALENLSLETIHLTKLPEFPPPPFCASIFPCFSKPPTITGLCRLHRGTCSLRESFCLLEGQAVDKLVALLDHTNERVAEAALSALSTLLDDAVDIEQGILVLCDAEGVKPVLDILVEKRTENMWRRAVWTVERLLRTDDIAYDVSGNQNVSTALVDAFQHGDYRTRQIAELALKHVDKLPNFSGIFPNMG 1005
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 111676 118287 - Conep20aG0001400.1 Cone20ag0014 459918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0014 1005 SUPERFAMILY ARM repeat 310 636 IPR016024 -
Cone20ag0014 1005 SMART Ubox_2 223 291 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone20ag0014 1005 Pfam Ribosome biogenesis protein C1orf109-like 7 172 IPR029159 -
Cone20ag0014 1005 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 203 1001 IPR052608 -
Cone20ag0014 1005 SMART arm_5 864 905 IPR000225 GO:0005515(InterPro)
Cone20ag0014 1005 SMART arm_5 498 537 IPR000225 GO:0005515(InterPro)
Cone20ag0014 1005 SMART arm_5 330 370 IPR000225 GO:0005515(InterPro)
Cone20ag0014 1005 SMART arm_5 781 823 IPR000225 GO:0005515(InterPro)
Cone20ag0014 1005 SMART arm_5 638 679 IPR000225 GO:0005515(InterPro)
Cone20ag0014 1005 SMART arm_5 538 583 IPR000225 GO:0005515(InterPro)
Cone20ag0014 1005 SMART arm_5 457 497 IPR000225 GO:0005515(InterPro)
Cone20ag0014 1005 SMART arm_5 372 412 IPR000225 GO:0005515(InterPro)
Cone20ag0014 1005 SUPERFAMILY RING/U-box 213 301 - -
Cone20ag0014 1005 CDD RING-Ubox_PUB 221 278 IPR045210 -
Cone20ag0014 1005 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 205 303 IPR013083 -
Cone20ag0014 1005 Gene3D - 510 678 IPR011989 -
Cone20ag0014 1005 Gene3D - 424 509 IPR011989 -
Cone20ag0014 1005 Gene3D - 304 423 IPR011989 -
Cone20ag0014 1005 SUPERFAMILY ARM repeat 594 991 IPR016024 -
Cone20ag0014 1005 Pfam U-box domain 222 296 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone20ag0014 1005 ProSiteProfiles U-box domain profile. 219 298 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone20ag0014 1005 Coils Coil 5 25 - -
Cone20ag0014 1005 Gene3D - 765 996 IPR011989 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1462 Cone-Chr17:9910382 Cone20ag0014 Cone-Chr20:111676 0 dispersed
Cone18ag1001 Cone-Chr18:7387287 Cone20ag0014 Cone-Chr20:111676 4.11E-22 dispersed
Cone20ag0014 Cone-Chr20:111676 Cone8ag0610 Cone-Chr8:5848638 2.88E-42 dispersed
Cone17ag1461 Cone-Chr17:9908095 Cone20ag0014 Cone-Chr20:111676 6.56E-61 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0014 - - - 0.0