Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0021 ATGGGTTGCTTTACTTCCTCTACTACTCGCCGGAAAGATGCTAGCAAGGTCGTCACCGATAATGGCACCCGATCCAGCTCTCGCCATTCAGCCGATTCCTTAGGTAGTAGGAAGGGGAAGTCAAATTTCAACGATGGTCGGGGCAAGAGTGGAAGTAGCCCGAAGTGCAGCGCTGCGCGTAGTTTCACATTCCGTGAACTGGCGGCTGCCACTAGAGGATTTAAGGAAGTGAATTTGATTGGTGAAGGGGGTTTTGGAAGGGTGTACAAAGGACGCTTAGAATCAAGCCAGGTTGTTGCAATTAAACAACTTAATCACAATGGGCTTCAAGGGTATCAAGAATTCATTGTGGAGGTTCTCATGTTAAGCCTGTTACACCACCCTAATCTTGTGACCTTGATTGGTTACTGCACCGATGGAGATCAAAGACTCTTGGTTTATGAGTACTTGCCCCTAGGGAGCTTGGAAGATCATCTTTTTGATTTGGACCCCAAAAAAGATCCCCTGAGCTGGAATACTCGGATTAAGATTGCCGTTGGTGCAGCCCAGGGTGTAGAGTATCTCCACTGCAAAGCAAACCCACCTGTTATCTACCGAGACTTGAAATCAGCTAACATCTTATTGGATAATGACTTCAACCCAAAGCTCTCAGATTTTGGACTTGCAAAACTGGGTCCTGTTGGGGACAATACTCATGTCTCAACCAGAGTTATGGGAACATATGGATATTGTGCTCCAGAGTATGCGATGAGTGGCAAGTTGACCCTTAAATCTGATATCTACAGCTTTGGTGTGGTTCTCTTGGAGCTCATCACTGGACGGAAGGCAATTGATGTTACGAAGAAACAGGGAGAACAGAATCTAGTCTCATGGTCGCGTCCTCTTTTGAAGGACCGGAGGAAGTTTGTGCAATTAGTAGATCCTCTGTTGCAAGGACACTATCCAGTCCGTTGTCTGCATCATGCTATTGCAATTACAGCCATGTGTCTTCAAGAGCAGCCAAACTTCCGCCCTTTAATCAGTGATATTGTTGTCGCACTCGAGTATTTGGCCTCCCAAGGTAGCCCTCGGGAAATTCAGAAGGGTGGGGTCCACAGTCCGTCCCAACCGTCGCCTTCGCGACAGGGCGGGAACTCCTTTTCCTGGGAATCTAATTCAAGAATGAATTCAACAAATATTTAA 1182 46.79 MGCFTSSTTRRKDASKVVTDNGTRSSSRHSADSLGSRKGKSNFNDGRGKSGSSPKCSAARSFTFRELAAATRGFKEVNLIGEGGFGRVYKGRLESSQVVAIKQLNHNGLQGYQEFIVEVLMLSLLHHPNLVTLIGYCTDGDQRLLVYEYLPLGSLEDHLFDLDPKKDPLSWNTRIKIAVGAAQGVEYLHCKANPPVIYRDLKSANILLDNDFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVLLELITGRKAIDVTKKQGEQNLVSWSRPLLKDRRKFVQLVDPLLQGHYPVRCLHHAIAITAMCLQEQPNFRPLISDIVVALEYLASQGSPREIQKGGVHSPSQPSPSRQGGNSFSWESNSRMNSTNI 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 137719 139917 + Conep20aG0002100.1 Cone20ag0021 459925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0021 393 MobiDBLite consensus disorder prediction 357 393 - -
Cone20ag0021 393 Pfam Protein kinase domain 75 343 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0021 393 MobiDBLite consensus disorder prediction 19 57 - -
Cone20ag0021 393 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone20ag0021 393 FunFam probable serine/threonine-protein kinase RLCKVII 47 149 - -
Cone20ag0021 393 ProSitePatterns Protein kinases ATP-binding region signature. 80 102 IPR017441 GO:0005524(InterPro)
Cone20ag0021 393 Gene3D Transferase(Phosphotransferase) domain 1 150 362 - -
Cone20ag0021 393 SUPERFAMILY Protein kinase-like (PK-like) 51 348 IPR011009 -
Cone20ag0021 393 PANTHER OS07G0668900 PROTEIN 33 360 - -
Cone20ag0021 393 FunFam Serine/threonine-protein kinase PBS1 150 363 - -
Cone20ag0021 393 Gene3D Phosphorylase Kinase; domain 1 46 149 - -
Cone20ag0021 393 SMART serkin_6 74 350 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0021 393 CDD STKc_IRAK 80 348 - -
Cone20ag0021 393 MobiDBLite consensus disorder prediction 1 57 - -
Cone20ag0021 393 ProSiteProfiles Protein kinase domain profile. 74 350 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0021 393 MobiDBLite consensus disorder prediction 362 393 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1456 Cone-Chr17:9885707 Cone20ag0021 Cone-Chr20:137719 9.55E-265 dispersed
Cone20ag0021 Cone-Chr20:137719 Cone5ag0318 Cone-Chr5:1348653 1.16E-163 dispersed
Cone17ag1455 Cone-Chr17:9881338 Cone20ag0021 Cone-Chr20:137719 2.85E-88 wgd
Cone20ag0021 Cone-Chr20:137719 Cone4ag2022 Cone-Chr4:14062413 2.79E-46 wgd
Cone20ag0021 Cone-Chr20:137719 Cone7ag1938 Cone-Chr7:12374215 2.67E-64 wgd
Cone20ag0021 Cone-Chr20:137719 Cone8ag1330 Cone-Chr8:10751564 3.09E-97 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82526 PF15011 CK2S 2.50E-48 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0021 - - - 0.0